help  | faq  | software  | BAR
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide

Oops!

Error: 403
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : AFB5 A. thaliana
DB identifier  ? AT5G49980 Secondary Identifier  ? locus:2158824
Name  ? auxin F-box protein 5 Brief Description  auxin F-box protein 5
TAIR Computational Description  auxin F-box protein 5;(source:Araport11)
TAIR Curator Summary  Member of TIR1/AFB group of F-box proteins, functions as an auxin receptor, mediates response to synthetic auxin picloran.
TAIR Short Description  auxin F-box protein 5
TAIR Aliases  AFB5
Paste the following link
Lists
This Gene isn't in any lists. Upload a list.

1 Gene Rifs

Trail: Gene

1 Organism

Trail: Gene

14 Publications

Trail: Gene

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2775  
Location: Chr5:20333897-20336671 reverse strand

Gene models - AFB5 AT5G49980

? Gene models

Transcripts: 1  Exons: 3  Introns: 2 

Overlapping Features

? Genome features that overlap coordinates of this Gene

CDSs: 3, Exons: 3, Five Prime UTR: 1, mRNA: 1, Three Prime UTR: 1
Show all in a table »

4 Child Features

Trail: Gene

1 Cross References

Trail: Gene

1 Downstream Intergenic Region

Trail: Gene

0 Located Features

1 Upstream Intergenic Region

Trail: Gene

Proteins

Show proteins
Curated comments from UniProt

Type Comment Proteins
TIR1L_ARATH pathway Protein modification; protein ubiquitination.

1 Proteins

Trail: Gene

Function

Gene Ontology

cellular component
nucleus  ? ECO  
SCF ubiquitin ligase complex  ? ECO  
molecular function
auxin binding  ? ECO  
inositol hexakisphosphate binding  ? ECO  
biological process
protein ubiquitination  ? ECO  
auxin-activated signaling pathway  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets

Trail: Gene





BAR logo CAGEF logo CAGEF logo Araport logo JCVI logo TACC logo

InterMine is funded by the and interoperation is funded by

© 2002 - 2021 Department of Genetics, University of Cambridge, Downing Street,
Cambridge CB2 3EH, United Kingdom