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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G15200:CDS:13 | 405 | Chr1: 5228477-5228881 | Arabidopsis thaliana |
AT1G15200:CDS:11 | 85 | Chr1: 5228967-5229051 | Arabidopsis thaliana |
AT1G15200:CDS:10 | 141 | Chr1: 5229128-5229268 | Arabidopsis thaliana |
AT1G15200:CDS:8 | 101 | Chr1: 5229346-5229446 | Arabidopsis thaliana |
AT1G15200:CDS:7 | 84 | Chr1: 5229546-5229629 | Arabidopsis thaliana |
AT1G15200:CDS:6 | 72 | Chr1: 5229979-5230050 | Arabidopsis thaliana |
AT1G15200:CDS:5 | 117 | Chr1: 5230172-5230288 | Arabidopsis thaliana |
AT1G15200:CDS:4 | 168 | Chr1: 5230374-5230541 | Arabidopsis thaliana |
AT1G15200:CDS:3 | 66 | Chr1: 5230623-5230688 | Arabidopsis thaliana |
AT1G15200:CDS:2 | 96 | Chr1: 5230765-5230860 | Arabidopsis thaliana |
AT1G15200:CDS:1 | 78 | Chr1: 5230940-5231017 | Arabidopsis thaliana |
AT1G15200:CDS:13.1 | 405 | Chr1: 5228477-5228881 | Arabidopsis thaliana |
AT1G15200:CDS:11.1 | 85 | Chr1: 5228967-5229051 | Arabidopsis thaliana |
AT1G15200:CDS:9 | 15 | Chr1: 5229247-5229261 | Arabidopsis thaliana |
AT1G15200:CDS:8.1 | 101 | Chr1: 5229346-5229446 | Arabidopsis thaliana |
AT1G15200:CDS:7.1 | 84 | Chr1: 5229546-5229629 | Arabidopsis thaliana |
AT1G15200:CDS:6.1 | 72 | Chr1: 5229979-5230050 | Arabidopsis thaliana |
AT1G15200:CDS:5.1 | 117 | Chr1: 5230172-5230288 | Arabidopsis thaliana |
AT1G15200:CDS:4.1 | 168 | Chr1: 5230374-5230541 | Arabidopsis thaliana |
AT1G15200:CDS:3.1 | 66 | Chr1: 5230623-5230688 | Arabidopsis thaliana |
AT1G15200:CDS:2.1 | 96 | Chr1: 5230765-5230860 | Arabidopsis thaliana |
AT1G15200:CDS:1.1 | 78 | Chr1: 5230940-5231017 | Arabidopsis thaliana |
AT1G15200:CDS:14 | 90 | Chr1: 5228477-5228566 | Arabidopsis thaliana |
AT1G15200:CDS:12 | 231 | Chr1: 5228651-5228881 | Arabidopsis thaliana |
AT1G15200:CDS:11.2 | 85 | Chr1: 5228967-5229051 | Arabidopsis thaliana |
AT1G15200:CDS:10.1 | 141 | Chr1: 5229128-5229268 | Arabidopsis thaliana |
AT1G15200:CDS:8.2 | 101 | Chr1: 5229346-5229446 | Arabidopsis thaliana |
AT1G15200:CDS:7.2 | 84 | Chr1: 5229546-5229629 | Arabidopsis thaliana |
AT1G15200:CDS:6.2 | 72 | Chr1: 5229979-5230050 | Arabidopsis thaliana |
AT1G15200:CDS:5.2 | 117 | Chr1: 5230172-5230288 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G15200:exon:9 | 15 | Chr1: 5229247-5229261 | Arabidopsis thaliana |
AT1G15200:exon:14 | 267 | Chr1: 5228300-5228566 | Arabidopsis thaliana |
AT1G15200:exon:12 | 231 | Chr1: 5228651-5228881 | Arabidopsis thaliana |
AT1G15200:exon:10 | 141 | Chr1: 5229128-5229268 | Arabidopsis thaliana |
AT1G15200:exon:13 | 582 | Chr1: 5228300-5228881 | Arabidopsis thaliana |
AT1G15200:exon:11 | 85 | Chr1: 5228967-5229051 | Arabidopsis thaliana |
AT1G15200:exon:8 | 101 | Chr1: 5229346-5229446 | Arabidopsis thaliana |
AT1G15200:exon:7 | 84 | Chr1: 5229546-5229629 | Arabidopsis thaliana |
AT1G15200:exon:6 | 72 | Chr1: 5229979-5230050 | Arabidopsis thaliana |
AT1G15200:exon:5 | 117 | Chr1: 5230172-5230288 | Arabidopsis thaliana |
AT1G15200:exon:4 | 168 | Chr1: 5230374-5230541 | Arabidopsis thaliana |
AT1G15200:exon:3 | 66 | Chr1: 5230623-5230688 | Arabidopsis thaliana |
AT1G15200:exon:2 | 96 | Chr1: 5230765-5230860 | Arabidopsis thaliana |
AT1G15200:exon:1 | 245 | Chr1: 5230940-5231184 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G15200:five_prime_UTR:1 | 167 | Chr1: 5231018-5231184 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G15200.3 | 1757 | Chr1: 5228300-5231184 |
AT1G15200.2 | 1631 | Chr1: 5228300-5231184 |
AT1G15200.4 | 1673 | Chr1: 5228300-5231184 |
AT1G15200.1 | 1616 | Chr1: 5228300-5231184 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G15200:three_prime_UTR:1 | 177 | Chr1: 5228300-5228476 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A654E9Y9_ARATH F4HZI6_ARATH F4HZI7_ARATH A0A5S9UII1_ARATH | similarity | Belongs to the pinin family. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
No terms in this category. | |
biological process | |
RNA splicing | ECO |
mRNA processing | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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