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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G12910:CDS:1 | 396 | Chr5: 4077162-4077557 | Arabidopsis thaliana |
AT5G12920:CDS:27 | 72 | Chr5: 4077917-4077988 | Arabidopsis thaliana |
AT5G12920:CDS:25 | 127 | Chr5: 4078205-4078331 | Arabidopsis thaliana |
AT5G12920:CDS:24 | 89 | Chr5: 4078428-4078516 | Arabidopsis thaliana |
AT5G12920:CDS:23 | 64 | Chr5: 4078614-4078677 | Arabidopsis thaliana |
AT5G12920:CDS:22 | 66 | Chr5: 4078771-4078836 | Arabidopsis thaliana |
AT5G12920:CDS:21 | 92 | Chr5: 4078965-4079056 | Arabidopsis thaliana |
AT5G12920:CDS:20 | 66 | Chr5: 4079245-4079310 | Arabidopsis thaliana |
AT5G12920:CDS:18 | 90 | Chr5: 4079438-4079527 | Arabidopsis thaliana |
AT5G12920:CDS:17 | 130 | Chr5: 4079658-4079787 | Arabidopsis thaliana |
AT5G12920:CDS:16 | 92 | Chr5: 4079876-4079967 | Arabidopsis thaliana |
AT5G12920:CDS:14 | 75 | Chr5: 4080376-4080450 | Arabidopsis thaliana |
AT5G12920:CDS:13 | 98 | Chr5: 4080550-4080647 | Arabidopsis thaliana |
AT5G12920:CDS:12 | 88 | Chr5: 4081105-4081192 | Arabidopsis thaliana |
AT5G12920:CDS:10 | 34 | Chr5: 4081371-4081404 | Arabidopsis thaliana |
AT5G12920:CDS:9 | 38 | Chr5: 4081555-4081592 | Arabidopsis thaliana |
AT5G12920:CDS:8 | 54 | Chr5: 4081674-4081727 | Arabidopsis thaliana |
AT5G12920:CDS:7 | 97 | Chr5: 4081833-4081929 | Arabidopsis thaliana |
AT5G12920:CDS:6 | 59 | Chr5: 4082003-4082061 | Arabidopsis thaliana |
AT5G12920:CDS:26 | 145 | Chr5: 4078187-4078331 | Arabidopsis thaliana |
AT5G12920:CDS:24.1 | 89 | Chr5: 4078428-4078516 | Arabidopsis thaliana |
AT5G12920:CDS:23.1 | 64 | Chr5: 4078614-4078677 | Arabidopsis thaliana |
AT5G12920:CDS:22.1 | 66 | Chr5: 4078771-4078836 | Arabidopsis thaliana |
AT5G12920:CDS:21.1 | 92 | Chr5: 4078965-4079056 | Arabidopsis thaliana |
AT5G12920:CDS:20.1 | 66 | Chr5: 4079245-4079310 | Arabidopsis thaliana |
AT5G12920:CDS:18.1 | 90 | Chr5: 4079438-4079527 | Arabidopsis thaliana |
AT5G12920:CDS:17.1 | 130 | Chr5: 4079658-4079787 | Arabidopsis thaliana |
AT5G12920:CDS:16.1 | 92 | Chr5: 4079876-4079967 | Arabidopsis thaliana |
AT5G12920:CDS:14.1 | 75 | Chr5: 4080376-4080450 | Arabidopsis thaliana |
AT5G12920:CDS:13.1 | 98 | Chr5: 4080550-4080647 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G12910:exon:1 | 396 | Chr5: 4077162-4077557 | Arabidopsis thaliana |
AT5G12920:exon:31 | 531 | Chr5: 4077458-4077988 | Arabidopsis thaliana |
AT5G12920:exon:30 | 874 | Chr5: 4077458-4078331 | Arabidopsis thaliana |
AT5G12920:exon:6 | 81 | Chr5: 4082003-4082083 | Arabidopsis thaliana |
AT5G12920:exon:29 | 316 | Chr5: 4077673-4077988 | Arabidopsis thaliana |
AT5G12920:exon:28 | 189 | Chr5: 4077773-4077961 | Arabidopsis thaliana |
AT5G12920:exon:12 | 130 | Chr5: 4081275-4081404 | Arabidopsis thaliana |
AT5G12920:exon:20 | 129 | Chr5: 4079399-4079527 | Arabidopsis thaliana |
AT5G12920:exon:7 | 75 | Chr5: 4082003-4082077 | Arabidopsis thaliana |
AT5G12920:exon:3 | 93 | Chr5: 4082400-4082492 | Arabidopsis thaliana |
AT5G12920:exon:2 | 35 | Chr5: 4082551-4082585 | Arabidopsis thaliana |
AT5G12920:exon:27 | 216 | Chr5: 4077773-4077988 | Arabidopsis thaliana |
AT5G12920:exon:26 | 127 | Chr5: 4078205-4078331 | Arabidopsis thaliana |
AT5G12920:exon:25 | 89 | Chr5: 4078428-4078516 | Arabidopsis thaliana |
AT5G12920:exon:24 | 64 | Chr5: 4078614-4078677 | Arabidopsis thaliana |
AT5G12920:exon:23 | 66 | Chr5: 4078771-4078836 | Arabidopsis thaliana |
AT5G12920:exon:22 | 92 | Chr5: 4078965-4079056 | Arabidopsis thaliana |
AT5G12920:exon:21 | 66 | Chr5: 4079245-4079310 | Arabidopsis thaliana |
AT5G12920:exon:19 | 90 | Chr5: 4079438-4079527 | Arabidopsis thaliana |
AT5G12920:exon:18 | 130 | Chr5: 4079658-4079787 | Arabidopsis thaliana |
AT5G12920:exon:17 | 92 | Chr5: 4079876-4079967 | Arabidopsis thaliana |
AT5G12920:exon:16 | 81 | Chr5: 4080146-4080226 | Arabidopsis thaliana |
AT5G12920:exon:15 | 75 | Chr5: 4080376-4080450 | Arabidopsis thaliana |
AT5G12920:exon:14 | 98 | Chr5: 4080550-4080647 | Arabidopsis thaliana |
AT5G12920:exon:13 | 88 | Chr5: 4081105-4081192 | Arabidopsis thaliana |
AT5G12920:exon:11 | 34 | Chr5: 4081371-4081404 | Arabidopsis thaliana |
AT5G12920:exon:10 | 38 | Chr5: 4081555-4081592 | Arabidopsis thaliana |
AT5G12920:exon:9 | 54 | Chr5: 4081674-4081727 | Arabidopsis thaliana |
AT5G12920:exon:8 | 97 | Chr5: 4081833-4081929 | Arabidopsis thaliana |
AT5G12920:exon:5 | 54 | Chr5: 4082231-4082284 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G12920:five_prime_UTR:2 | 22 | Chr5: 4082062-4082083 | Arabidopsis thaliana |
AT5G12920:five_prime_UTR:1 | 49 | Chr5: 4082586-4082634 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G12910 | locus:2182320 | AT5G12910 | 396 | Chr5: 4077162-4077557 | A. thaliana | Histone superfamily protein;(source:Araport11) | Plays role in cell fate reprogramming during plant regeneration; expression is rapidly induced upon wounding. Involved in release from PRC2-mediated gene repression by its deposition into chromatin, which is involved in reprogramming cell fate to produce pluripotent callus cells. | Histone superfamily protein | H3.15 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G12910.1 | 396 | Chr5: 4077162-4077557 |
AT5G12920.5 | 1912 | Chr5: 4077458-4082083 |
AT5G12920.4 | 2128 | Chr5: 4077458-4082083 |
AT5G12920.6 | 1819 | Chr5: 4077673-4082585 |
AT5G12920.2 | 1863 | Chr5: 4077773-4082585 |
AT5G12920.7 | 1836 | Chr5: 4077773-4082585 |
AT5G12920.8 | 1728 | Chr5: 4077773-4082585 |
AT5G12920.1 | 1758 | Chr5: 4077773-4082585 |
AT5G12920.3 | 1858 | Chr5: 4077773-4082634 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G12920:three_prime_UTR:4 | 459 | Chr5: 4077458-4077916 | Arabidopsis thaliana |
AT5G12920:three_prime_UTR:3 | 729 | Chr5: 4077458-4078186 | Arabidopsis thaliana |
AT5G12920:three_prime_UTR:2 | 244 | Chr5: 4077673-4077916 | Arabidopsis thaliana |
AT5G12920:three_prime_UTR:1 | 144 | Chr5: 4077773-4077916 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...