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Genomics
Genome feature
| Region: |
gene
|
Length: |
19695
 |
| Location: | Chr1:21746354-21766048 | ||
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 6, Exons: 12, Five Prime UTRs: 5, mRNAs: 3, Three Prime UTRs: 5, Transposable Elements: 16, Transposable Element Gene: 1, Transposon Fragments: 20
CDSs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G58602:CDS:1 |
889
|
Chr1: 21760167-21761055 | Arabidopsis thaliana |
| AT1G58602:CDS:2 |
147
|
Chr1: 21761146-21761292 | Arabidopsis thaliana |
| AT1G58602:CDS:3 |
2381
|
Chr1: 21761385-21763765 | Arabidopsis thaliana |
| AT1G58602:CDS:1.1 |
889
|
Chr1: 21760167-21761055 | Arabidopsis thaliana |
| AT1G58602:CDS:2.1 |
147
|
Chr1: 21761146-21761292 | Arabidopsis thaliana |
| AT1G58602:CDS:3.1 |
2381
|
Chr1: 21761385-21763765 | Arabidopsis thaliana |
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G58602:exon:1 |
146
|
Chr1: 21746354-21746499 | Arabidopsis thaliana |
| AT1G58602:exon:11 |
998
|
Chr1: 21765051-21766048 | Arabidopsis thaliana |
| AT1G58602:exon:2 |
127
|
Chr1: 21746373-21746499 | Arabidopsis thaliana |
| AT1G58602:exon:3 |
205
|
Chr1: 21753884-21754088 | Arabidopsis thaliana |
| AT1G58602:exon:4 |
150
|
Chr1: 21758509-21758658 | Arabidopsis thaliana |
| AT1G58602:exon:5 |
897
|
Chr1: 21760159-21761055 | Arabidopsis thaliana |
| AT1G58602:exon:6 |
147
|
Chr1: 21761146-21761292 | Arabidopsis thaliana |
| AT1G58602:exon:7 |
2403
|
Chr1: 21761385-21763787 | Arabidopsis thaliana |
| AT1G58602:exon:8 |
44
|
Chr1: 21763878-21763921 | Arabidopsis thaliana |
| AT1G58602:exon:9 |
126
|
Chr1: 21764033-21764158 | Arabidopsis thaliana |
| AT1G58602:exon:10 |
305
|
Chr1: 21764770-21765074 | Arabidopsis thaliana |
| AT1G58561:exon:1 |
4572
|
Chr1: 21748675-21753246 | Arabidopsis thaliana |
Five Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G58602:five_prime_UTR:1 |
146
|
Chr1: 21746354-21746499 | Arabidopsis thaliana |
| AT1G58602:five_prime_UTR:2 |
127
|
Chr1: 21746373-21746499 | Arabidopsis thaliana |
| AT1G58602:five_prime_UTR:3 |
205
|
Chr1: 21753884-21754088 | Arabidopsis thaliana |
| AT1G58602:five_prime_UTR:4 |
150
|
Chr1: 21758509-21758658 | Arabidopsis thaliana |
| AT1G58602:five_prime_UTR:5 |
8
|
Chr1: 21760159-21760166 | Arabidopsis thaliana |
mRNAs
| DB identifier | Length | Chromosome Location |
|---|---|---|
| AT1G58602.2 |
5116
|
Chr1: 21746354-21766048 |
| AT1G58602.1 |
4404
|
Chr1: 21746373-21765074 |
| AT1G58561.1 |
4572
|
Chr1: 21748675-21753246 |
Three Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G58602:three_prime_UTR:5 |
998
|
Chr1: 21765051-21766048 | Arabidopsis thaliana |
| AT1G58602:three_prime_UTR:1 |
22
|
Chr1: 21763766-21763787 | Arabidopsis thaliana |
| AT1G58602:three_prime_UTR:2 |
44
|
Chr1: 21763878-21763921 | Arabidopsis thaliana |
| AT1G58602:three_prime_UTR:3 |
126
|
Chr1: 21764033-21764158 | Arabidopsis thaliana |
| AT1G58602:three_prime_UTR:4 |
305
|
Chr1: 21764770-21765074 | Arabidopsis thaliana |
Transposable Elements
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1TE71760 |
23
|
Chr1: 21746489-21746511 | Arabidopsis thaliana |
| AT1TE71765 |
228
|
Chr1: 21746512-21746739 | Arabidopsis thaliana |
| AT1TE71770 |
588
|
Chr1: 21746740-21747327 | Arabidopsis thaliana |
| AT1TE71775 |
5195
|
Chr1: 21748194-21753388 | Arabidopsis thaliana |
| AT1TE71780 |
153
|
Chr1: 21753390-21753542 | Arabidopsis thaliana |
| AT1TE71785 |
52
|
Chr1: 21754301-21754352 | Arabidopsis thaliana |
| AT1TE71790 |
827
|
Chr1: 21754363-21755189 | Arabidopsis thaliana |
| AT1TE71795 |
66
|
Chr1: 21755190-21755255 | Arabidopsis thaliana |
| AT1TE71800 |
21
|
Chr1: 21755256-21755276 | Arabidopsis thaliana |
| AT1TE71805 |
611
|
Chr1: 21755304-21755914 | Arabidopsis thaliana |
| AT1TE71810 |
770
|
Chr1: 21755963-21756732 | Arabidopsis thaliana |
| AT1TE71815 |
422
|
Chr1: 21756214-21756635 | Arabidopsis thaliana |
| AT1TE71820 |
267
|
Chr1: 21756733-21756999 | Arabidopsis thaliana |
| AT1TE71825 |
1626
|
Chr1: 21757000-21758625 | Arabidopsis thaliana |
| AT1TE71830 |
1023
|
Chr1: 21758660-21759682 | Arabidopsis thaliana |
| AT1TE71840 |
146
|
Chr1: 21765453-21765598 | Arabidopsis thaliana |
Transposable Element Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT1G58561 | locus:504956183 | AT1G58561 |
4572
|
Chr1: 21748675-21753246 | A. thaliana | transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.8e-219 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);(source:TAIR10) | NULL | transposable element gene |
Transposon Fragments
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1TE71760:transposon_fragment:1 |
23
|
Chr1: 21746489-21746511 | Arabidopsis thaliana |
| AT1TE71765:transposon_fragment:1 |
228
|
Chr1: 21746512-21746739 | Arabidopsis thaliana |
| AT1TE71770:transposon_fragment:1 |
588
|
Chr1: 21746740-21747327 | Arabidopsis thaliana |
| AT1TE71775:transposon_fragment:1 |
5195
|
Chr1: 21748194-21753388 | Arabidopsis thaliana |
| AT1TE71780:transposon_fragment:1 |
153
|
Chr1: 21753390-21753542 | Arabidopsis thaliana |
| AT1TE71785:transposon_fragment:1 |
52
|
Chr1: 21754301-21754352 | Arabidopsis thaliana |
| AT1TE71790:transposon_fragment:1 |
827
|
Chr1: 21754363-21755189 | Arabidopsis thaliana |
| AT1TE71795:transposon_fragment:1 |
66
|
Chr1: 21755190-21755255 | Arabidopsis thaliana |
| AT1TE71800:transposon_fragment:1 |
21
|
Chr1: 21755256-21755276 | Arabidopsis thaliana |
| AT1TE71805:transposon_fragment:2 |
95
|
Chr1: 21755304-21755398 | Arabidopsis thaliana |
| AT1TE71805:transposon_fragment:1 |
452
|
Chr1: 21755463-21755914 | Arabidopsis thaliana |
| AT1TE71810:transposon_fragment:2 |
251
|
Chr1: 21755963-21756213 | Arabidopsis thaliana |
| AT1TE71810:transposon_fragment:1 |
97
|
Chr1: 21756636-21756732 | Arabidopsis thaliana |
| AT1TE71815:transposon_fragment:1 |
422
|
Chr1: 21756214-21756635 | Arabidopsis thaliana |
| AT1TE71820:transposon_fragment:1 |
267
|
Chr1: 21756733-21756999 | Arabidopsis thaliana |
| AT1TE71825:transposon_fragment:2 |
474
|
Chr1: 21757000-21757473 | Arabidopsis thaliana |
| AT1TE71825:transposon_fragment:1 |
1145
|
Chr1: 21757481-21758625 | Arabidopsis thaliana |
| AT1TE71830:transposon_fragment:1 |
123
|
Chr1: 21758660-21758782 | Arabidopsis thaliana |
| AT1TE71830:transposon_fragment:2 |
900
|
Chr1: 21758783-21759682 | Arabidopsis thaliana |
| AT1TE71840:transposon_fragment:1 |
146
|
Chr1: 21765453-21765598 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
| Type | Comment | Proteins |
|---|---|---|
| RPP7_ARATH | function | Disease resistance protein required for incompatible interactions with avirulent strains of Hyaloperonospora arabidopsidis (downy mildew), isolate Hpa-Hiks1 in cv. Columbia. |
| RPP7_ARATH | similarity | Belongs to the disease resistance NB-LRR family. |
Function
Gene Ontology
| cellular component | |
|---|---|
| No terms in this category. | |
| molecular function | |
|
ATP binding
|
ECO |
|
ADP binding
|
ECO |
| biological process | |
|
defense response to oomycetes
|
ECO |
Interactions
Interaction Network
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