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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G67240:CDS:19 | 336 | Chr5: 26824454-26824789 | Arabidopsis thaliana |
AT5G67240:CDS:18 | 102 | Chr5: 26824880-26824981 | Arabidopsis thaliana |
AT5G67240:CDS:14 | 315 | Chr5: 26825074-26825388 | Arabidopsis thaliana |
AT5G67240:CDS:13 | 102 | Chr5: 26825481-26825582 | Arabidopsis thaliana |
AT5G67240:CDS:12 | 315 | Chr5: 26825671-26825985 | Arabidopsis thaliana |
AT5G67240:CDS:10 | 99 | Chr5: 26826076-26826174 | Arabidopsis thaliana |
AT5G67240:CDS:9 | 141 | Chr5: 26826278-26826418 | Arabidopsis thaliana |
AT5G67240:CDS:8 | 132 | Chr5: 26826522-26826653 | Arabidopsis thaliana |
AT5G67240:CDS:7 | 101 | Chr5: 26826757-26826857 | Arabidopsis thaliana |
AT5G67240:CDS:6 | 187 | Chr5: 26826942-26827128 | Arabidopsis thaliana |
AT5G67240:CDS:5 | 144 | Chr5: 26827216-26827359 | Arabidopsis thaliana |
AT5G67240:CDS:4 | 69 | Chr5: 26827450-26827518 | Arabidopsis thaliana |
AT5G67240:CDS:3 | 90 | Chr5: 26827607-26827696 | Arabidopsis thaliana |
AT5G67240:CDS:2 | 183 | Chr5: 26827770-26827952 | Arabidopsis thaliana |
AT5G67240:CDS:1 | 33 | Chr5: 26828066-26828098 | Arabidopsis thaliana |
AT5G67240:CDS:17 | 111 | Chr5: 26825062-26825172 | Arabidopsis thaliana |
AT5G67240:CDS:11 | 216 | Chr5: 26825770-26825985 | Arabidopsis thaliana |
AT5G67240:CDS:10.1 | 99 | Chr5: 26826076-26826174 | Arabidopsis thaliana |
AT5G67240:CDS:9.1 | 141 | Chr5: 26826278-26826418 | Arabidopsis thaliana |
AT5G67240:CDS:8.1 | 132 | Chr5: 26826522-26826653 | Arabidopsis thaliana |
AT5G67240:CDS:7.1 | 101 | Chr5: 26826757-26826857 | Arabidopsis thaliana |
AT5G67240:CDS:6.1 | 187 | Chr5: 26826942-26827128 | Arabidopsis thaliana |
AT5G67240:CDS:5.1 | 144 | Chr5: 26827216-26827359 | Arabidopsis thaliana |
AT5G67240:CDS:4.1 | 69 | Chr5: 26827450-26827518 | Arabidopsis thaliana |
AT5G67240:CDS:3.1 | 90 | Chr5: 26827607-26827696 | Arabidopsis thaliana |
AT5G67240:CDS:2.1 | 183 | Chr5: 26827770-26827952 | Arabidopsis thaliana |
AT5G67240:CDS:1.1 | 33 | Chr5: 26828066-26828098 | Arabidopsis thaliana |
AT5G67240:CDS:19.1 | 336 | Chr5: 26824454-26824789 | Arabidopsis thaliana |
AT5G67240:CDS:18.1 | 102 | Chr5: 26824880-26824981 | Arabidopsis thaliana |
AT5G67240:CDS:15 | 99 | Chr5: 26825074-26825172 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G67230:exon:3 | 346 | Chr5: 26823983-26824328 | Arabidopsis thaliana |
AT5G67240:exon:23 | 554 | Chr5: 26824236-26824789 | Arabidopsis thaliana |
AT5G67240:exon:16 | 315 | Chr5: 26825074-26825388 | Arabidopsis thaliana |
AT5G67240:exon:1 | 253 | Chr5: 26828066-26828318 | Arabidopsis thaliana |
AT5G67240:exon:22 | 365 | Chr5: 26824425-26824789 | Arabidopsis thaliana |
AT5G67240:exon:19 | 293 | Chr5: 26824880-26825172 | Arabidopsis thaliana |
AT5G67240:exon:21 | 336 | Chr5: 26824454-26824789 | Arabidopsis thaliana |
AT5G67240:exon:20 | 102 | Chr5: 26824880-26824981 | Arabidopsis thaliana |
AT5G67240:exon:17 | 99 | Chr5: 26825074-26825172 | Arabidopsis thaliana |
AT5G67240:exon:13 | 216 | Chr5: 26825770-26825985 | Arabidopsis thaliana |
AT5G67240:exon:2 | 165 | Chr5: 26828066-26828230 | Arabidopsis thaliana |
AT5G67240:exon:18 | 327 | Chr5: 26825062-26825388 | Arabidopsis thaliana |
AT5G67240:exon:15 | 102 | Chr5: 26825481-26825582 | Arabidopsis thaliana |
AT5G67240:exon:14 | 315 | Chr5: 26825671-26825985 | Arabidopsis thaliana |
AT5G67240:exon:12 | 99 | Chr5: 26826076-26826174 | Arabidopsis thaliana |
AT5G67240:exon:11 | 141 | Chr5: 26826278-26826418 | Arabidopsis thaliana |
AT5G67240:exon:10 | 132 | Chr5: 26826522-26826653 | Arabidopsis thaliana |
AT5G67240:exon:9 | 101 | Chr5: 26826757-26826857 | Arabidopsis thaliana |
AT5G67240:exon:8 | 187 | Chr5: 26826942-26827128 | Arabidopsis thaliana |
AT5G67240:exon:7 | 144 | Chr5: 26827216-26827359 | Arabidopsis thaliana |
AT5G67240:exon:6 | 69 | Chr5: 26827450-26827518 | Arabidopsis thaliana |
AT5G67240:exon:5 | 90 | Chr5: 26827607-26827696 | Arabidopsis thaliana |
AT5G67240:exon:4 | 183 | Chr5: 26827770-26827952 | Arabidopsis thaliana |
AT5G67240:exon:3 | 141 | Chr5: 26828066-26828206 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G67240:five_prime_UTR:1 | 220 | Chr5: 26828099-26828318 | Arabidopsis thaliana |
AT5G67240:five_prime_UTR:2 | 132 | Chr5: 26828099-26828230 | Arabidopsis thaliana |
AT5G67240:five_prime_UTR:3 | 108 | Chr5: 26828099-26828206 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G67230 | locus:2155533 | IRX14-L | IRREGULAR XYLEM 14-LIKE | 1897 | Chr5: 26822432-26824328 | A. thaliana | Nucleotide-diphospho-sugar transferases superfamily protein;(source:Araport11) | Encodes a member of the GT43 family glycosyltransferases involved in glucuronoxylan biosynthesis: AT2G37090 (IRX9) and AT1G27600 (IRX9-L or I9H, IRX9 homolog); AT4G36890 (IRX14) and AT5G67230 (IRX14-L or I14H, IRX14 homolog). They form two functionally non-redundant groups essential for the normal elongation of glucuronoxylan backbone. I9H functions redundantly with IRX9, I14H is redundant with IRX14. IRX9 or I9H do not complement IRX14, IRX14 or I14H do not complement IRX9. | Nucleotide-diphospho-sugar transferases superfamily protein | I14H, IRX14-L |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G67230.1 | 1700 | Chr5: 26822432-26824328 |
AT5G67240.1 | 2787 | Chr5: 26824236-26828318 |
AT5G67240.2 | 2161 | Chr5: 26824425-26828206 |
AT5G67240.3 | 2064 | Chr5: 26824454-26828230 |
AT5G67240.4 | 2031 | Chr5: 26825062-26828206 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G67230:three_prime_UTR:1 | 147 | Chr5: 26824182-26824328 | Arabidopsis thaliana |
AT5G67240:three_prime_UTR:3 | 218 | Chr5: 26824236-26824453 | Arabidopsis thaliana |
AT5G67240:three_prime_UTR:2 | 365 | Chr5: 26824425-26824789 | Arabidopsis thaliana |
AT5G67240:three_prime_UTR:1 | 182 | Chr5: 26824880-26825061 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
SDN3_ARATH | function | 3'-5' exonuclease degrading single-stranded small RNAs. |
SDN3_ARATH | similarity | Belongs to the REXO1/REXO3 family. |
Function
Gene Ontology
cellular component | |
---|---|
mediator complex | ECO |
molecular function | |
exonuclease activity | ECO |
RNA binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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