External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 20, Exons: 13, Five Prime UTRs: 3, Genes: 2, mRNAs: 4, Three Prime UTRs: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G66280:CDS:1 | 1086 | Chr5: 26476434-26477519 | Arabidopsis thaliana |
AT5G66290:CDS:9 | 336 | Chr5: 26477296-26477631 | Arabidopsis thaliana |
AT5G66290:CDS:7 | 152 | Chr5: 26477965-26478116 | Arabidopsis thaliana |
AT5G66290:CDS:5 | 112 | Chr5: 26478207-26478318 | Arabidopsis thaliana |
AT5G66290:CDS:4 | 89 | Chr5: 26478693-26478781 | Arabidopsis thaliana |
AT5G66290:CDS:3 | 85 | Chr5: 26479049-26479133 | Arabidopsis thaliana |
AT5G66290:CDS:2 | 87 | Chr5: 26479226-26479312 | Arabidopsis thaliana |
AT5G66290:CDS:1 | 36 | Chr5: 26479406-26479441 | Arabidopsis thaliana |
AT5G66290:CDS:8 | 200 | Chr5: 26477917-26478116 | Arabidopsis thaliana |
AT5G66290:CDS:5.1 | 112 | Chr5: 26478207-26478318 | Arabidopsis thaliana |
AT5G66290:CDS:4.1 | 89 | Chr5: 26478693-26478781 | Arabidopsis thaliana |
AT5G66290:CDS:3.1 | 85 | Chr5: 26479049-26479133 | Arabidopsis thaliana |
AT5G66290:CDS:2.1 | 87 | Chr5: 26479226-26479312 | Arabidopsis thaliana |
AT5G66290:CDS:1.1 | 36 | Chr5: 26479406-26479441 | Arabidopsis thaliana |
AT5G66290:CDS:6 | 20 | Chr5: 26478083-26478102 | Arabidopsis thaliana |
AT5G66290:CDS:5.2 | 112 | Chr5: 26478207-26478318 | Arabidopsis thaliana |
AT5G66290:CDS:4.2 | 89 | Chr5: 26478693-26478781 | Arabidopsis thaliana |
AT5G66290:CDS:3.2 | 85 | Chr5: 26479049-26479133 | Arabidopsis thaliana |
AT5G66290:CDS:2.2 | 87 | Chr5: 26479226-26479312 | Arabidopsis thaliana |
AT5G66290:CDS:1.2 | 36 | Chr5: 26479406-26479441 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G09595:exon:1 | 1637 | Chr5: 26476110-26477746 | Arabidopsis thaliana |
AT5G66280:exon:1 | 1589 | Chr5: 26476166-26477754 | Arabidopsis thaliana |
AT5G66290:exon:11 | 336 | Chr5: 26477296-26477631 | Arabidopsis thaliana |
AT5G66290:exon:9 | 152 | Chr5: 26477965-26478116 | Arabidopsis thaliana |
AT5G66290:exon:3 | 172 | Chr5: 26479406-26479577 | Arabidopsis thaliana |
AT5G66290:exon:10 | 456 | Chr5: 26477661-26478116 | Arabidopsis thaliana |
AT5G66290:exon:2 | 178 | Chr5: 26479406-26479583 | Arabidopsis thaliana |
AT5G66290:exon:8 | 20 | Chr5: 26478083-26478102 | Arabidopsis thaliana |
AT5G66290:exon:7 | 112 | Chr5: 26478207-26478318 | Arabidopsis thaliana |
AT5G66290:exon:6 | 89 | Chr5: 26478693-26478781 | Arabidopsis thaliana |
AT5G66290:exon:5 | 85 | Chr5: 26479049-26479133 | Arabidopsis thaliana |
AT5G66290:exon:4 | 87 | Chr5: 26479226-26479312 | Arabidopsis thaliana |
AT5G66290:exon:1 | 185 | Chr5: 26479406-26479590 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G66290:five_prime_UTR:3 | 136 | Chr5: 26479442-26479577 | Arabidopsis thaliana |
AT5G66290:five_prime_UTR:2 | 142 | Chr5: 26479442-26479583 | Arabidopsis thaliana |
AT5G66290:five_prime_UTR:1 | 149 | Chr5: 26479442-26479590 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G09595 | AT5G09595 | 1637 | Chr5: 26476110-26477746 | A. thaliana | Natural antisense transcript overlaps with AT5G66280;(source:Araport11) | NULL | ||||
AT5G66280 | locus:2155036 | GMD1 | GDP-D-mannose 4,6-dehydratase 1 | 1589 | Chr5: 26476166-26477754 | A. thaliana | GDP-D-mannose 4,6-dehydratase 1;(source:Araport11) | GDP-D-mannose 4,6-dehydratase | GDP-D-mannose 4,6-dehydratase 1 | GMD1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G66280.1 | 1589 | Chr5: 26476166-26477754 |
AT5G66290.2 | 1033 | Chr5: 26477296-26479577 |
AT5G66290.1 | 1007 | Chr5: 26477661-26479583 |
AT5G66290.3 | 578 | Chr5: 26478083-26479590 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G66280:three_prime_UTR:1 | 235 | Chr5: 26477520-26477754 | Arabidopsis thaliana |
AT5G66290:three_prime_UTR:1 | 256 | Chr5: 26477661-26477916 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
Reset view
Show in table format
Export graph
- Click on a gene to get more info about it.
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
---|
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...