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Gene : NPH3 A. thaliana

DB identifier  ? AT5G64330 Secondary Identifier  ? locus:2173418
Name  ? NON-PHOTOTROPIC HYPOCOTYL 3 Brief Description  Phototropic-responsive NPH3 family protein
TAIR Computational Description  Phototropic-responsive NPH3 family protein;(source:Araport11)
TAIR Curator Summary  Involved in blue light response signaling pathway; interacts with the blue light photoreceptor NPH1. Null mutations abolish phototrophic responses of etiolated seedlings to low fluence blue light. Protein contains multiple protein-protein interaction domains.
TAIR Short Description  Phototropic-responsive NPH3 family protein
TAIR Aliases  JK218, NPH3, RPT3

14 Gene Rifs

1 Organism

46 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3233  
Location: Chr5:25727126-25730358

Gene models - NPH3 AT5G64330

? Gene models

Transcripts: 3  Exons: 15  Introns: 12 

Overlapping Features

? Genome features that overlap coordinates of this Gene

12 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
RPT3_ARATH-2 RPT3_ARATH function May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Signal transducer of the phototropic response and photo-induced movements. Involved in the phot1 pathway under low blue light (LBL) fluence rate and in the phot2 pathway under higher fluence rate of blue light (HBL). Necessary for root and hypocotyl phototropisms, but not for the regulation of stomata opening. Not involved in chloroplast accumulation and translocation.
A0A1P8BBW9_ARATH RPT3_ARATH-2 A0A2H1ZE95_ARATH RPT3_ARATH pathway Protein modification; protein ubiquitination.
A0A1P8BBW9_ARATH RPT3_ARATH-2 A0A2H1ZE95_ARATH RPT3_ARATH similarity Belongs to the NPH3 family.
RPT3_ARATH-2 RPT3_ARATH tissue specificity Expressed in hypocotyls, guard cells and mesophyll cells.

4 Proteins

Function

Gene Ontology

cellular component
plasma membrane  ? ECO  
molecular function
No terms in this category.
biological process
protein ubiquitination  ? ECO  
phototropism  ? ECO  
blue light signaling pathway  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets