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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G63960:CDS:1 | 286 | Chr5: 25599597-25599882 | Arabidopsis thaliana |
AT5G63960:CDS:2 | 111 | Chr5: 25599977-25600087 | Arabidopsis thaliana |
AT5G63960:CDS:3 | 107 | Chr5: 25600169-25600275 | Arabidopsis thaliana |
AT5G63960:CDS:4 | 160 | Chr5: 25600355-25600514 | Arabidopsis thaliana |
AT5G63960:CDS:5 | 196 | Chr5: 25600603-25600798 | Arabidopsis thaliana |
AT5G63960:CDS:6 | 136 | Chr5: 25600892-25601027 | Arabidopsis thaliana |
AT5G63960:CDS:8 | 189 | Chr5: 25601115-25601303 | Arabidopsis thaliana |
AT5G63960:CDS:9 | 78 | Chr5: 25601463-25601540 | Arabidopsis thaliana |
AT5G63960:CDS:10 | 92 | Chr5: 25601723-25601814 | Arabidopsis thaliana |
AT5G63960:CDS:11 | 67 | Chr5: 25601947-25602013 | Arabidopsis thaliana |
AT5G63960:CDS:12 | 72 | Chr5: 25602105-25602176 | Arabidopsis thaliana |
AT5G63960:CDS:13 | 87 | Chr5: 25602253-25602339 | Arabidopsis thaliana |
AT5G63960:CDS:14 | 120 | Chr5: 25602854-25602973 | Arabidopsis thaliana |
AT5G63960:CDS:15 | 99 | Chr5: 25603049-25603147 | Arabidopsis thaliana |
AT5G63960:CDS:16 | 108 | Chr5: 25603254-25603361 | Arabidopsis thaliana |
AT5G63960:CDS:17 | 96 | Chr5: 25603467-25603562 | Arabidopsis thaliana |
AT5G63960:CDS:18 | 66 | Chr5: 25603699-25603764 | Arabidopsis thaliana |
AT5G63960:CDS:19 | 57 | Chr5: 25603860-25603916 | Arabidopsis thaliana |
AT5G63960:CDS:20 | 88 | Chr5: 25604044-25604131 | Arabidopsis thaliana |
AT5G63960:CDS:21 | 80 | Chr5: 25604212-25604291 | Arabidopsis thaliana |
AT5G63960:CDS:22 | 114 | Chr5: 25604391-25604504 | Arabidopsis thaliana |
AT5G63960:CDS:23 | 115 | Chr5: 25604652-25604766 | Arabidopsis thaliana |
AT5G63960:CDS:24 | 173 | Chr5: 25604841-25605013 | Arabidopsis thaliana |
AT5G63960:CDS:25 | 72 | Chr5: 25605151-25605222 | Arabidopsis thaliana |
AT5G63960:CDS:26 | 75 | Chr5: 25605662-25605736 | Arabidopsis thaliana |
AT5G63960:CDS:27 | 90 | Chr5: 25605828-25605917 | Arabidopsis thaliana |
AT5G63960:CDS:28 | 161 | Chr5: 25606003-25606163 | Arabidopsis thaliana |
AT5G63960:CDS:29 | 68 | Chr5: 25606247-25606314 | Arabidopsis thaliana |
AT5G63960:CDS:30 | 88 | Chr5: 25606392-25606479 | Arabidopsis thaliana |
AT5G63960:CDS:31 | 88 | Chr5: 25606585-25606672 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G63960:exon:8 | 189 | Chr5: 25601115-25601303 | Arabidopsis thaliana |
AT5G63960:exon:31 | 184 | Chr5: 25606585-25606768 | Arabidopsis thaliana |
AT5G63960:exon:1 | 369 | Chr5: 25599514-25599882 | Arabidopsis thaliana |
AT5G63960:exon:2 | 111 | Chr5: 25599977-25600087 | Arabidopsis thaliana |
AT5G63960:exon:3 | 107 | Chr5: 25600169-25600275 | Arabidopsis thaliana |
AT5G63960:exon:4 | 160 | Chr5: 25600355-25600514 | Arabidopsis thaliana |
AT5G63960:exon:5 | 196 | Chr5: 25600603-25600798 | Arabidopsis thaliana |
AT5G63960:exon:6 | 136 | Chr5: 25600892-25601027 | Arabidopsis thaliana |
AT5G63960:exon:7 | 138 | Chr5: 25601115-25601252 | Arabidopsis thaliana |
AT5G63960:exon:9 | 78 | Chr5: 25601463-25601540 | Arabidopsis thaliana |
AT5G63960:exon:10 | 92 | Chr5: 25601723-25601814 | Arabidopsis thaliana |
AT5G63960:exon:11 | 67 | Chr5: 25601947-25602013 | Arabidopsis thaliana |
AT5G63960:exon:12 | 72 | Chr5: 25602105-25602176 | Arabidopsis thaliana |
AT5G63960:exon:13 | 87 | Chr5: 25602253-25602339 | Arabidopsis thaliana |
AT5G63960:exon:14 | 120 | Chr5: 25602854-25602973 | Arabidopsis thaliana |
AT5G63960:exon:15 | 99 | Chr5: 25603049-25603147 | Arabidopsis thaliana |
AT5G63960:exon:16 | 108 | Chr5: 25603254-25603361 | Arabidopsis thaliana |
AT5G63960:exon:17 | 96 | Chr5: 25603467-25603562 | Arabidopsis thaliana |
AT5G63960:exon:18 | 66 | Chr5: 25603699-25603764 | Arabidopsis thaliana |
AT5G63960:exon:19 | 57 | Chr5: 25603860-25603916 | Arabidopsis thaliana |
AT5G63960:exon:20 | 88 | Chr5: 25604044-25604131 | Arabidopsis thaliana |
AT5G63960:exon:21 | 80 | Chr5: 25604212-25604291 | Arabidopsis thaliana |
AT5G63960:exon:22 | 114 | Chr5: 25604391-25604504 | Arabidopsis thaliana |
AT5G63960:exon:23 | 115 | Chr5: 25604652-25604766 | Arabidopsis thaliana |
AT5G63960:exon:24 | 173 | Chr5: 25604841-25605013 | Arabidopsis thaliana |
AT5G63960:exon:25 | 72 | Chr5: 25605151-25605222 | Arabidopsis thaliana |
AT5G63960:exon:26 | 75 | Chr5: 25605662-25605736 | Arabidopsis thaliana |
AT5G63960:exon:27 | 90 | Chr5: 25605828-25605917 | Arabidopsis thaliana |
AT5G63960:exon:28 | 161 | Chr5: 25606003-25606163 | Arabidopsis thaliana |
AT5G63960:exon:29 | 68 | Chr5: 25606247-25606314 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G63960:five_prime_UTR:1 | 83 | Chr5: 25599514-25599596 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G63970 | locus:2160821 | RGLG3 | RING DOMAIN LIGASE 3 | 2536 | Chr5: 25606771-25609306 | A. thaliana | Copine (Calcium-dependent phospholipid-binding protein) family;(source:Araport11) | Encodes a ubiquitin ligase that is an essential upstream modulator of JA signaling in response to various stimuli. | Copine (Calcium-dependent phospholipid-binding protein) family | RGLG3 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G63960.2 | 3518 | Chr5: 25599514-25606768 |
AT5G63960.1 | 3540 | Chr5: 25599514-25606841 |
AT5G63970.2 | 1410 | Chr5: 25606771-25608987 |
AT5G63970.1 | 1629 | Chr5: 25606771-25609306 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G63960:three_prime_UTR:1 | 96 | Chr5: 25606673-25606768 | Arabidopsis thaliana |
AT5G63960:three_prime_UTR:2 | 169 | Chr5: 25606673-25606841 | Arabidopsis thaliana |
AT5G63970:three_prime_UTR:1 | 235 | Chr5: 25606771-25607005 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
DPOD1_ARATH | function | This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. |
DPOD1_ARATH F4KC69_ARATH | similarity | Belongs to the DNA polymerase type-B family. |
Function
Gene Ontology
cellular component | |
---|---|
delta DNA polymerase complex | ECO |
molecular function | |
nucleotide binding | ECO |
4 iron, 4 sulfur cluster binding | ECO |
metal ion binding | ECO |
DNA binding | ECO |
3'-5'-DNA exonuclease activity | ECO |
DNA-directed DNA polymerase activity | ECO |
biological process | |
DNA replication proofreading | ECO |
DNA-templated DNA replication | ECO |
base-excision repair, gap-filling | ECO |
nucleotide-excision repair, DNA gap filling | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...