External Links
- Aracyc
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- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
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- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 28, Exons: 21, Five Prime UTRs: 4, Genes: 3, Lnc RNA: 1, mRNAs: 3, Three Prime UTRs: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G63490:CDS:14 | 192 | Chr5: 25418716-25418907 | Arabidopsis thaliana |
AT5G63490:CDS:13 | 90 | Chr5: 25419045-25419134 | Arabidopsis thaliana |
AT5G63490:CDS:12 | 86 | Chr5: 25419233-25419318 | Arabidopsis thaliana |
AT5G63490:CDS:11 | 116 | Chr5: 25419400-25419515 | Arabidopsis thaliana |
AT5G63490:CDS:10 | 110 | Chr5: 25419620-25419729 | Arabidopsis thaliana |
AT5G63490:CDS:9 | 59 | Chr5: 25419838-25419896 | Arabidopsis thaliana |
AT5G63490:CDS:8 | 106 | Chr5: 25419987-25420092 | Arabidopsis thaliana |
AT5G63490:CDS:7 | 67 | Chr5: 25420220-25420286 | Arabidopsis thaliana |
AT5G63490:CDS:6 | 114 | Chr5: 25420620-25420733 | Arabidopsis thaliana |
AT5G63490:CDS:5 | 79 | Chr5: 25420835-25420913 | Arabidopsis thaliana |
AT5G63490:CDS:4 | 171 | Chr5: 25420993-25421163 | Arabidopsis thaliana |
AT5G63490:CDS:3 | 133 | Chr5: 25421262-25421394 | Arabidopsis thaliana |
AT5G63490:CDS:2 | 172 | Chr5: 25421502-25421673 | Arabidopsis thaliana |
AT5G63490:CDS:1 | 137 | Chr5: 25421834-25421970 | Arabidopsis thaliana |
AT5G63490:CDS:14.1 | 192 | Chr5: 25418716-25418907 | Arabidopsis thaliana |
AT5G63490:CDS:13.1 | 90 | Chr5: 25419045-25419134 | Arabidopsis thaliana |
AT5G63490:CDS:12.1 | 86 | Chr5: 25419233-25419318 | Arabidopsis thaliana |
AT5G63490:CDS:11.1 | 116 | Chr5: 25419400-25419515 | Arabidopsis thaliana |
AT5G63490:CDS:10.1 | 110 | Chr5: 25419620-25419729 | Arabidopsis thaliana |
AT5G63490:CDS:9.1 | 59 | Chr5: 25419838-25419896 | Arabidopsis thaliana |
AT5G63490:CDS:8.1 | 106 | Chr5: 25419987-25420092 | Arabidopsis thaliana |
AT5G63490:CDS:7.1 | 67 | Chr5: 25420220-25420286 | Arabidopsis thaliana |
AT5G63490:CDS:6.1 | 114 | Chr5: 25420620-25420733 | Arabidopsis thaliana |
AT5G63490:CDS:5.1 | 79 | Chr5: 25420835-25420913 | Arabidopsis thaliana |
AT5G63490:CDS:4.1 | 171 | Chr5: 25420993-25421163 | Arabidopsis thaliana |
AT5G63490:CDS:3.1 | 133 | Chr5: 25421262-25421394 | Arabidopsis thaliana |
AT5G63490:CDS:2.1 | 172 | Chr5: 25421502-25421673 | Arabidopsis thaliana |
AT5G63490:CDS:1.1 | 137 | Chr5: 25421834-25421970 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G63480:exon:6 | 261 | Chr5: 25418375-25418635 | Arabidopsis thaliana |
AT5G63490:exon:18 | 314 | Chr5: 25418594-25418907 | Arabidopsis thaliana |
AT5G63490:exon:3 | 142 | Chr5: 25421834-25421975 | Arabidopsis thaliana |
AT5G63490:exon:1 | 330 | Chr5: 25422137-25422466 | Arabidopsis thaliana |
AT5G63490:exon:17 | 192 | Chr5: 25418716-25418907 | Arabidopsis thaliana |
AT5G63490:exon:16 | 90 | Chr5: 25419045-25419134 | Arabidopsis thaliana |
AT5G63490:exon:15 | 86 | Chr5: 25419233-25419318 | Arabidopsis thaliana |
AT5G63490:exon:14 | 116 | Chr5: 25419400-25419515 | Arabidopsis thaliana |
AT5G63490:exon:13 | 110 | Chr5: 25419620-25419729 | Arabidopsis thaliana |
AT5G63490:exon:12 | 59 | Chr5: 25419838-25419896 | Arabidopsis thaliana |
AT5G63490:exon:11 | 106 | Chr5: 25419987-25420092 | Arabidopsis thaliana |
AT5G63490:exon:10 | 67 | Chr5: 25420220-25420286 | Arabidopsis thaliana |
AT5G63490:exon:9 | 114 | Chr5: 25420620-25420733 | Arabidopsis thaliana |
AT5G63490:exon:8 | 79 | Chr5: 25420835-25420913 | Arabidopsis thaliana |
AT5G63490:exon:7 | 171 | Chr5: 25420993-25421163 | Arabidopsis thaliana |
AT5G63490:exon:6 | 133 | Chr5: 25421262-25421394 | Arabidopsis thaliana |
AT5G63490:exon:5 | 172 | Chr5: 25421502-25421673 | Arabidopsis thaliana |
AT5G63490:exon:4 | 139 | Chr5: 25421834-25421972 | Arabidopsis thaliana |
AT5G63490:exon:2 | 275 | Chr5: 25422137-25422411 | Arabidopsis thaliana |
AT5G09160:exon:1 | 202 | Chr5: 25420555-25420756 | Arabidopsis thaliana |
AT5G09165:exon:1 | 242 | Chr5: 25422276-25422517 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G63490:five_prime_UTR:3 | 5 | Chr5: 25421971-25421975 | Arabidopsis thaliana |
AT5G63490:five_prime_UTR:1 | 330 | Chr5: 25422137-25422466 | Arabidopsis thaliana |
AT5G63490:five_prime_UTR:4 | 2 | Chr5: 25421971-25421972 | Arabidopsis thaliana |
AT5G63490:five_prime_UTR:2 | 275 | Chr5: 25422137-25422411 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G63480 | locus:2167321 | AT5G63480 | 1803 | Chr5: 25416833-25418635 | A. thaliana | mediator of RNA polymerase II transcription subunit;(source:Araport11) | NULL | NULL | MED30 | |
AT5G09160 | AT5G09160 | 202 | Chr5: 25420555-25420756 | A. thaliana | Natural antisense transcript overlaps with AT5G63490;(source:Araport11) | NULL | ||||
AT5G09165 | AT5G09165 | 242 | Chr5: 25422276-25422517 | A. thaliana | None;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G63480.1 | 800 | Chr5: 25417249-25418635 |
AT5G63490.1 | 2089 | Chr5: 25418594-25422466 |
AT5G63490.2 | 1909 | Chr5: 25418716-25422411 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G63480:three_prime_UTR:1 | 162 | Chr5: 25418474-25418635 | Arabidopsis thaliana |
AT5G63490:three_prime_UTR:1 | 122 | Chr5: 25418594-25418715 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...