help  | faq  | software  | BAR
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : AT5G63120 A. thaliana

DB identifier  ? AT5G63120 Secondary Identifier  ? locus:2162022
Brief Description  P-loop containing nucleoside triphosphate hydrolases superfamily protein
TAIR Computational Description  P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
TAIR Curator Summary  NULL
TAIR Short Description  P-loop containing nucleoside triphosphate hydrolases superfamily protein
TAIR Aliases  RH30

0 Gene Rifs

1 Organism

13 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3643  
Location: Chr5:25318642-25322284 reverse strand

Gene models - AT5G63120 AT5G63120

? Gene models

Transcripts: 5  Exons: 48  Introns: 43 

Overlapping Features

? Genome features that overlap coordinates of this Gene

22 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
RH30_ARATH-2 RH30_ARATH function ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing.
A0A1P8BFB3_ARATH similarity Belongs to the DEAD box helicase family.
RH30_ARATH-2 RH30_ARATH similarity Belongs to the DEAD box helicase family. DDX5/DBP2 subfamily.

3 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
molecular function
RNA helicase activity  ? ECO  
mRNA binding  ? ECO  
RNA binding  ? ECO  
ATP hydrolysis activity  ? ECO  
ATP binding  ? ECO  
biological process
rRNA processing  ? ECO  
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets