External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 22, Exons: 12, Five Prime UTRs: 5, mRNAs: 3, Three Prime UTRs: 2, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G62460:CDS:3 | 303 | Chr5: 25075545-25075847 | Arabidopsis thaliana |
AT5G62460:CDS:4 | 72 | Chr5: 25075945-25076016 | Arabidopsis thaliana |
AT5G62460:CDS:5 | 65 | Chr5: 25076111-25076175 | Arabidopsis thaliana |
AT5G62460:CDS:6 | 154 | Chr5: 25076341-25076494 | Arabidopsis thaliana |
AT5G62460:CDS:7 | 90 | Chr5: 25076562-25076651 | Arabidopsis thaliana |
AT5G62460:CDS:8 | 90 | Chr5: 25076749-25076838 | Arabidopsis thaliana |
AT5G62460:CDS:9 | 150 | Chr5: 25076923-25077072 | Arabidopsis thaliana |
AT5G62460:CDS:3.1 | 303 | Chr5: 25075545-25075847 | Arabidopsis thaliana |
AT5G62460:CDS:4.1 | 72 | Chr5: 25075945-25076016 | Arabidopsis thaliana |
AT5G62460:CDS:5.1 | 65 | Chr5: 25076111-25076175 | Arabidopsis thaliana |
AT5G62460:CDS:6.1 | 154 | Chr5: 25076341-25076494 | Arabidopsis thaliana |
AT5G62460:CDS:7.1 | 90 | Chr5: 25076562-25076651 | Arabidopsis thaliana |
AT5G62460:CDS:8.1 | 90 | Chr5: 25076749-25076838 | Arabidopsis thaliana |
AT5G62460:CDS:9.1 | 150 | Chr5: 25076923-25077072 | Arabidopsis thaliana |
AT5G62460:CDS:1 | 3 | Chr5: 25075194-25075196 | Arabidopsis thaliana |
AT5G62460:CDS:2 | 339 | Chr5: 25075509-25075847 | Arabidopsis thaliana |
AT5G62460:CDS:4.2 | 72 | Chr5: 25075945-25076016 | Arabidopsis thaliana |
AT5G62460:CDS:5.2 | 65 | Chr5: 25076111-25076175 | Arabidopsis thaliana |
AT5G62460:CDS:6.2 | 154 | Chr5: 25076341-25076494 | Arabidopsis thaliana |
AT5G62460:CDS:7.2 | 90 | Chr5: 25076562-25076651 | Arabidopsis thaliana |
AT5G62460:CDS:8.2 | 90 | Chr5: 25076749-25076838 | Arabidopsis thaliana |
AT5G62460:CDS:9.2 | 150 | Chr5: 25076923-25077072 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G62460:exon:1 | 57 | Chr5: 25074782-25074838 | Arabidopsis thaliana |
AT5G62460:exon:4 | 128 | Chr5: 25074918-25075045 | Arabidopsis thaliana |
AT5G62460:exon:2 | 264 | Chr5: 25074782-25075045 | Arabidopsis thaliana |
AT5G62460:exon:11 | 468 | Chr5: 25076923-25077390 | Arabidopsis thaliana |
AT5G62460:exon:3 | 342 | Chr5: 25074855-25075196 | Arabidopsis thaliana |
AT5G62460:exon:5 | 339 | Chr5: 25075509-25075847 | Arabidopsis thaliana |
AT5G62460:exon:6 | 72 | Chr5: 25075945-25076016 | Arabidopsis thaliana |
AT5G62460:exon:7 | 65 | Chr5: 25076111-25076175 | Arabidopsis thaliana |
AT5G62460:exon:8 | 154 | Chr5: 25076341-25076494 | Arabidopsis thaliana |
AT5G62460:exon:9 | 90 | Chr5: 25076562-25076651 | Arabidopsis thaliana |
AT5G62460:exon:10 | 90 | Chr5: 25076749-25076838 | Arabidopsis thaliana |
AT5G62460:exon:12 | 476 | Chr5: 25076923-25077398 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G62460:five_prime_UTR:1 | 57 | Chr5: 25074782-25074838 | Arabidopsis thaliana |
AT5G62460:five_prime_UTR:4 | 128 | Chr5: 25074918-25075045 | Arabidopsis thaliana |
AT5G62460:five_prime_UTR:2 | 264 | Chr5: 25074782-25075045 | Arabidopsis thaliana |
AT5G62460:five_prime_UTR:5 | 36 | Chr5: 25075509-25075544 | Arabidopsis thaliana |
AT5G62460:five_prime_UTR:3 | 339 | Chr5: 25074855-25075193 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G62460.2 | 1463 | Chr5: 25074782-25077390 |
AT5G62460.1 | 1542 | Chr5: 25074782-25077390 |
AT5G62460.3 | 1628 | Chr5: 25074855-25077398 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G62460:three_prime_UTR:1 | 318 | Chr5: 25077073-25077390 | Arabidopsis thaliana |
AT5G62460:three_prime_UTR:2 | 326 | Chr5: 25077073-25077398 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE90220 | 648 | Chr5: 25074153-25074800 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE90220:transposon_fragment:1 | 648 | Chr5: 25074153-25074800 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
molecular function | |
zinc ion binding | ECO |
ubiquitin-protein transferase activity | ECO |
biological process | |
protein ubiquitination | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...