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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G62165:CDS:1 | 182 | Chr5: 24965075-24965256 | Arabidopsis thaliana |
AT5G62165:CDS:3 | 82 | Chr5: 24966362-24966443 | Arabidopsis thaliana |
AT5G62165:CDS:5 | 62 | Chr5: 24966818-24966879 | Arabidopsis thaliana |
AT5G62165:CDS:7 | 100 | Chr5: 24967328-24967427 | Arabidopsis thaliana |
AT5G62165:CDS:9 | 42 | Chr5: 24967695-24967736 | Arabidopsis thaliana |
AT5G62165:CDS:11 | 42 | Chr5: 24967841-24967882 | Arabidopsis thaliana |
AT5G62165:CDS:12 | 123 | Chr5: 24968315-24968437 | Arabidopsis thaliana |
AT5G62165:CDS:1.1 | 182 | Chr5: 24965075-24965256 | Arabidopsis thaliana |
AT5G62165:CDS:3.1 | 82 | Chr5: 24966362-24966443 | Arabidopsis thaliana |
AT5G62165:CDS:5.1 | 62 | Chr5: 24966818-24966879 | Arabidopsis thaliana |
AT5G62165:CDS:8 | 136 | Chr5: 24967328-24967463 | Arabidopsis thaliana |
AT5G62165:CDS:1.2 | 182 | Chr5: 24965075-24965256 | Arabidopsis thaliana |
AT5G62165:CDS:3.2 | 82 | Chr5: 24966362-24966443 | Arabidopsis thaliana |
AT5G62165:CDS:5.2 | 62 | Chr5: 24966818-24966879 | Arabidopsis thaliana |
AT5G62165:CDS:8.1 | 136 | Chr5: 24967328-24967463 | Arabidopsis thaliana |
AT5G62165:CDS:1.3 | 182 | Chr5: 24965075-24965256 | Arabidopsis thaliana |
AT5G62165:CDS:3.3 | 82 | Chr5: 24966362-24966443 | Arabidopsis thaliana |
AT5G62165:CDS:5.3 | 62 | Chr5: 24966818-24966879 | Arabidopsis thaliana |
AT5G62165:CDS:7.1 | 100 | Chr5: 24967328-24967427 | Arabidopsis thaliana |
AT5G62165:CDS:11.1 | 42 | Chr5: 24967841-24967882 | Arabidopsis thaliana |
AT5G62165:CDS:12.1 | 123 | Chr5: 24968315-24968437 | Arabidopsis thaliana |
AT5G62165:CDS:1.4 | 182 | Chr5: 24965075-24965256 | Arabidopsis thaliana |
AT5G62165:CDS:3.4 | 82 | Chr5: 24966362-24966443 | Arabidopsis thaliana |
AT5G62165:CDS:5.4 | 62 | Chr5: 24966818-24966879 | Arabidopsis thaliana |
AT5G62165:CDS:8.2 | 136 | Chr5: 24967328-24967463 | Arabidopsis thaliana |
AT5G62165:CDS:1.5 | 182 | Chr5: 24965075-24965256 | Arabidopsis thaliana |
AT5G62165:CDS:3.5 | 82 | Chr5: 24966362-24966443 | Arabidopsis thaliana |
AT5G62165:CDS:5.5 | 62 | Chr5: 24966818-24966879 | Arabidopsis thaliana |
AT5G62165:CDS:8.3 | 136 | Chr5: 24967328-24967463 | Arabidopsis thaliana |
AT5G62165:CDS:1.6 | 182 | Chr5: 24965075-24965256 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G62165:exon:1 | 314 | Chr5: 24964646-24964959 | Arabidopsis thaliana |
AT5G62165:exon:2 | 611 | Chr5: 24964646-24965256 | Arabidopsis thaliana |
AT5G62165:exon:25 | 293 | Chr5: 24968315-24968607 | Arabidopsis thaliana |
AT5G62165:exon:3 | 303 | Chr5: 24964657-24964959 | Arabidopsis thaliana |
AT5G62165:exon:15 | 409 | Chr5: 24967328-24967736 | Arabidopsis thaliana |
AT5G62165:exon:4 | 288 | Chr5: 24964672-24964959 | Arabidopsis thaliana |
AT5G62165:exon:5 | 269 | Chr5: 24964691-24964959 | Arabidopsis thaliana |
AT5G62165:exon:16 | 555 | Chr5: 24967328-24967882 | Arabidopsis thaliana |
AT5G62165:exon:23 | 222 | Chr5: 24968315-24968536 | Arabidopsis thaliana |
AT5G62165:exon:6 | 557 | Chr5: 24964700-24965256 | Arabidopsis thaliana |
AT5G62165:exon:21 | 206 | Chr5: 24968315-24968520 | Arabidopsis thaliana |
AT5G62165:exon:7 | 234 | Chr5: 24964726-24964959 | Arabidopsis thaliana |
AT5G62165:exon:10 | 219 | Chr5: 24965038-24965256 | Arabidopsis thaliana |
AT5G62165:exon:20 | 195 | Chr5: 24968315-24968509 | Arabidopsis thaliana |
AT5G62165:exon:8 | 213 | Chr5: 24964747-24964959 | Arabidopsis thaliana |
AT5G62165:exon:11 | 207 | Chr5: 24965050-24965256 | Arabidopsis thaliana |
AT5G62165:exon:17 | 42 | Chr5: 24967695-24967736 | Arabidopsis thaliana |
AT5G62165:exon:19 | 42 | Chr5: 24967841-24967882 | Arabidopsis thaliana |
AT5G62165:exon:24 | 264 | Chr5: 24968315-24968578 | Arabidopsis thaliana |
AT5G62165:exon:9 | 266 | Chr5: 24964991-24965256 | Arabidopsis thaliana |
AT5G62165:exon:12 | 82 | Chr5: 24966362-24966443 | Arabidopsis thaliana |
AT5G62165:exon:13 | 62 | Chr5: 24966818-24966879 | Arabidopsis thaliana |
AT5G62165:exon:14 | 100 | Chr5: 24967328-24967427 | Arabidopsis thaliana |
AT5G62165:exon:18 | 188 | Chr5: 24967695-24967882 | Arabidopsis thaliana |
AT5G62165:exon:22 | 221 | Chr5: 24968315-24968535 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G62165:five_prime_UTR:1 | 314 | Chr5: 24964646-24964959 | Arabidopsis thaliana |
AT5G62165:five_prime_UTR:2 | 429 | Chr5: 24964646-24965074 | Arabidopsis thaliana |
AT5G62165:five_prime_UTR:3 | 303 | Chr5: 24964657-24964959 | Arabidopsis thaliana |
AT5G62165:five_prime_UTR:4 | 288 | Chr5: 24964672-24964959 | Arabidopsis thaliana |
AT5G62165:five_prime_UTR:10 | 37 | Chr5: 24965038-24965074 | Arabidopsis thaliana |
AT5G62165:five_prime_UTR:5 | 269 | Chr5: 24964691-24964959 | Arabidopsis thaliana |
AT5G62165:five_prime_UTR:12 | 25 | Chr5: 24965050-24965074 | Arabidopsis thaliana |
AT5G62165:five_prime_UTR:6 | 375 | Chr5: 24964700-24965074 | Arabidopsis thaliana |
AT5G62165:five_prime_UTR:7 | 234 | Chr5: 24964726-24964959 | Arabidopsis thaliana |
AT5G62165:five_prime_UTR:11 | 134 | Chr5: 24965038-24965171 | Arabidopsis thaliana |
AT5G62165:five_prime_UTR:8 | 213 | Chr5: 24964747-24964959 | Arabidopsis thaliana |
AT5G62165:five_prime_UTR:13 | 122 | Chr5: 24965050-24965171 | Arabidopsis thaliana |
AT5G62165:five_prime_UTR:9 | 84 | Chr5: 24964991-24965074 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G62165.2 | 1142 | Chr5: 24964646-24968607 |
AT5G62165.8 | 1513 | Chr5: 24964646-24968607 |
AT5G62165.7 | 1525 | Chr5: 24964646-24968607 |
AT5G62165.10 | 1100 | Chr5: 24964646-24968607 |
AT5G62165.9 | 1409 | Chr5: 24964646-24968607 |
AT5G62165.6 | 1603 | Chr5: 24964646-24968607 |
AT5G62165.11 | 1175 | Chr5: 24964657-24968535 |
AT5G62165.12 | 1163 | Chr5: 24964657-24968535 |
AT5G62165.4 | 1057 | Chr5: 24964672-24968578 |
AT5G62165.13 | 1366 | Chr5: 24964672-24968578 |
AT5G62165.3 | 1099 | Chr5: 24964672-24968578 |
AT5G62165.15 | 949 | Chr5: 24964691-24968509 |
AT5G62165.14 | 1335 | Chr5: 24964691-24968536 |
AT5G62165.1 | 1091 | Chr5: 24964700-24968520 |
AT5G62165.16 | 872 | Chr5: 24964726-24968509 |
AT5G62165.5 | 950 | Chr5: 24964747-24968578 |
AT5G62165.17 | 919 | Chr5: 24964991-24968535 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G62165:three_prime_UTR:13 | 170 | Chr5: 24968438-24968607 | Arabidopsis thaliana |
AT5G62165:three_prime_UTR:3 | 419 | Chr5: 24967464-24967882 | Arabidopsis thaliana |
AT5G62165:three_prime_UTR:9 | 293 | Chr5: 24968315-24968607 | Arabidopsis thaliana |
AT5G62165:three_prime_UTR:2 | 273 | Chr5: 24967464-24967736 | Arabidopsis thaliana |
AT5G62165:three_prime_UTR:5 | 42 | Chr5: 24967841-24967882 | Arabidopsis thaliana |
AT5G62165:three_prime_UTR:8 | 264 | Chr5: 24968315-24968578 | Arabidopsis thaliana |
AT5G62165:three_prime_UTR:1 | 495 | Chr5: 24967388-24967882 | Arabidopsis thaliana |
AT5G62165:three_prime_UTR:7 | 222 | Chr5: 24968315-24968536 | Arabidopsis thaliana |
AT5G62165:three_prime_UTR:11 | 83 | Chr5: 24968438-24968520 | Arabidopsis thaliana |
AT5G62165:three_prime_UTR:10 | 72 | Chr5: 24968438-24968509 | Arabidopsis thaliana |
AT5G62165:three_prime_UTR:12 | 141 | Chr5: 24968438-24968578 | Arabidopsis thaliana |
AT5G62165:three_prime_UTR:4 | 140 | Chr5: 24967743-24967882 | Arabidopsis thaliana |
AT5G62165:three_prime_UTR:6 | 221 | Chr5: 24968315-24968535 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
AGL42_ARATH AGL42_ARATH-2 | developmental stage | Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. |
AGL42_ARATH AGL42_ARATH-2 | function | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). |
AGL42_ARATH AGL42_ARATH-2 | tissue specificity | Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
RNA polymerase II transcription regulatory region sequence-specific DNA binding | ECO |
DNA-binding transcription factor activity | ECO |
protein dimerization activity | ECO |
biological process | |
cell differentiation | ECO |
floral organ senescence | ECO |
leaf senescence | ECO |
abscission | ECO |
positive regulation of transcription by RNA polymerase II | ECO |
regulation of flower development | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...