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Gene : AGL42 A. thaliana

DB identifier  ? AT5G62165 Secondary Identifier  ? locus:505006709
Name  ? AGAMOUS-like 42 Brief Description  AGAMOUS-like 42
TAIR Computational Description  AGAMOUS-like 42;(source:Araport11)
TAIR Curator Summary  Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.
TAIR Short Description  AGAMOUS-like 42
TAIR Aliases  AGL42, FYF

2 Gene Rifs

1 Organism

20 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3962  
Location: Chr5:24964646-24968607

Gene models - AGL42 AT5G62165

? Gene models

Transcripts: 17  Exons: 113  Introns: 96 

Overlapping Features

? Genome features that overlap coordinates of this Gene

42 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
AGL42_ARATH AGL42_ARATH-2 developmental stage Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia.
AGL42_ARATH AGL42_ARATH-2 function MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171).
AGL42_ARATH AGL42_ARATH-2 tissue specificity Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques.

7 Proteins

Function

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets