External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G61560:CDS:2 | 136 | Chr5: 24753476-24753611 | Arabidopsis thaliana |
AT5G61560:CDS:3 | 122 | Chr5: 24753697-24753818 | Arabidopsis thaliana |
AT5G61560:CDS:4 | 122 | Chr5: 24753894-24754015 | Arabidopsis thaliana |
AT5G61560:CDS:5 | 176 | Chr5: 24754085-24754260 | Arabidopsis thaliana |
AT5G61560:CDS:6 | 320 | Chr5: 24754329-24754648 | Arabidopsis thaliana |
AT5G61560:CDS:8 | 102 | Chr5: 24754731-24754832 | Arabidopsis thaliana |
AT5G61560:CDS:9 | 438 | Chr5: 24754916-24755353 | Arabidopsis thaliana |
AT5G61560:CDS:10 | 789 | Chr5: 24755440-24756228 | Arabidopsis thaliana |
AT5G61560:CDS:11 | 186 | Chr5: 24756321-24756506 | Arabidopsis thaliana |
AT5G61560:CDS:1 | 193 | Chr5: 24753419-24753611 | Arabidopsis thaliana |
AT5G61560:CDS:3.1 | 122 | Chr5: 24753697-24753818 | Arabidopsis thaliana |
AT5G61560:CDS:4.1 | 122 | Chr5: 24753894-24754015 | Arabidopsis thaliana |
AT5G61560:CDS:5.1 | 176 | Chr5: 24754085-24754260 | Arabidopsis thaliana |
AT5G61560:CDS:6.1 | 320 | Chr5: 24754329-24754648 | Arabidopsis thaliana |
AT5G61560:CDS:8.1 | 102 | Chr5: 24754731-24754832 | Arabidopsis thaliana |
AT5G61560:CDS:9.1 | 438 | Chr5: 24754916-24755353 | Arabidopsis thaliana |
AT5G61560:CDS:10.1 | 789 | Chr5: 24755440-24756228 | Arabidopsis thaliana |
AT5G61560:CDS:11.1 | 186 | Chr5: 24756321-24756506 | Arabidopsis thaliana |
AT5G61560:CDS:2.1 | 136 | Chr5: 24753476-24753611 | Arabidopsis thaliana |
AT5G61560:CDS:3.2 | 122 | Chr5: 24753697-24753818 | Arabidopsis thaliana |
AT5G61560:CDS:4.2 | 122 | Chr5: 24753894-24754015 | Arabidopsis thaliana |
AT5G61560:CDS:5.2 | 176 | Chr5: 24754085-24754260 | Arabidopsis thaliana |
AT5G61560:CDS:7 | 314 | Chr5: 24754335-24754648 | Arabidopsis thaliana |
AT5G61560:CDS:8.2 | 102 | Chr5: 24754731-24754832 | Arabidopsis thaliana |
AT5G61560:CDS:9.2 | 438 | Chr5: 24754916-24755353 | Arabidopsis thaliana |
AT5G61560:CDS:10.2 | 789 | Chr5: 24755440-24756228 | Arabidopsis thaliana |
AT5G61560:CDS:11.2 | 186 | Chr5: 24756321-24756506 | Arabidopsis thaliana |
AT5G61560:CDS:1.1 | 193 | Chr5: 24753419-24753611 | Arabidopsis thaliana |
AT5G61560:CDS:3.3 | 122 | Chr5: 24753697-24753818 | Arabidopsis thaliana |
AT5G61560:CDS:4.3 | 122 | Chr5: 24753894-24754015 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G61560:exon:1 | 304 | Chr5: 24752783-24753086 | Arabidopsis thaliana |
AT5G61560:exon:6 | 294 | Chr5: 24753318-24753611 | Arabidopsis thaliana |
AT5G61560:exon:19 | 448 | Chr5: 24756321-24756768 | Arabidopsis thaliana |
AT5G61560:exon:2 | 237 | Chr5: 24752850-24753086 | Arabidopsis thaliana |
AT5G61560:exon:5 | 55 | Chr5: 24753318-24753372 | Arabidopsis thaliana |
AT5G61560:exon:12 | 314 | Chr5: 24754335-24754648 | Arabidopsis thaliana |
AT5G61560:exon:16 | 392 | Chr5: 24756321-24756712 | Arabidopsis thaliana |
AT5G61560:exon:3 | 432 | Chr5: 24753180-24753611 | Arabidopsis thaliana |
AT5G61560:exon:17 | 399 | Chr5: 24756321-24756719 | Arabidopsis thaliana |
AT5G61560:exon:4 | 163 | Chr5: 24753210-24753372 | Arabidopsis thaliana |
AT5G61560:exon:7 | 160 | Chr5: 24753452-24753611 | Arabidopsis thaliana |
AT5G61560:exon:8 | 122 | Chr5: 24753697-24753818 | Arabidopsis thaliana |
AT5G61560:exon:9 | 122 | Chr5: 24753894-24754015 | Arabidopsis thaliana |
AT5G61560:exon:10 | 176 | Chr5: 24754085-24754260 | Arabidopsis thaliana |
AT5G61560:exon:11 | 320 | Chr5: 24754329-24754648 | Arabidopsis thaliana |
AT5G61560:exon:13 | 102 | Chr5: 24754731-24754832 | Arabidopsis thaliana |
AT5G61560:exon:14 | 438 | Chr5: 24754916-24755353 | Arabidopsis thaliana |
AT5G61560:exon:15 | 789 | Chr5: 24755440-24756228 | Arabidopsis thaliana |
AT5G61560:exon:18 | 438 | Chr5: 24756321-24756758 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G61560:five_prime_UTR:1 | 304 | Chr5: 24752783-24753086 | Arabidopsis thaliana |
AT5G61560:five_prime_UTR:6 | 101 | Chr5: 24753318-24753418 | Arabidopsis thaliana |
AT5G61560:five_prime_UTR:2 | 237 | Chr5: 24752850-24753086 | Arabidopsis thaliana |
AT5G61560:five_prime_UTR:5 | 55 | Chr5: 24753318-24753372 | Arabidopsis thaliana |
AT5G61560:five_prime_UTR:3 | 239 | Chr5: 24753180-24753418 | Arabidopsis thaliana |
AT5G61560:five_prime_UTR:4 | 163 | Chr5: 24753210-24753372 | Arabidopsis thaliana |
AT5G61560:five_prime_UTR:7 | 24 | Chr5: 24753452-24753475 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G61560.1 | 3036 | Chr5: 24752783-24756768 |
AT5G61560.3 | 3115 | Chr5: 24752783-24756768 |
AT5G61560.2 | 2907 | Chr5: 24752850-24756712 |
AT5G61560.4 | 2900 | Chr5: 24753180-24756719 |
AT5G61560.5 | 2830 | Chr5: 24753210-24756758 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G61560:three_prime_UTR:4 | 262 | Chr5: 24756507-24756768 | Arabidopsis thaliana |
AT5G61560:three_prime_UTR:1 | 206 | Chr5: 24756507-24756712 | Arabidopsis thaliana |
AT5G61560:three_prime_UTR:2 | 213 | Chr5: 24756507-24756719 | Arabidopsis thaliana |
AT5G61560:three_prime_UTR:3 | 252 | Chr5: 24756507-24756758 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
PUB51_ARATH F4K3J6_ARATH A0A1P8BBM2_ARATH PUB51_ARATH-2 | function | Functions as an E3 ubiquitin ligase. |
PUB51_ARATH F4K3J6_ARATH A0A1P8BBM2_ARATH PUB51_ARATH-2 | pathway | Protein modification; protein ubiquitination. |
PUB51_ARATH PUB51_ARATH-2 | similarity | Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. |
Function
Gene Ontology
cellular component | |
---|---|
chloroplast | ECO |
molecular function | |
ATP binding | ECO |
protein serine kinase activity | ECO |
ubiquitin-protein transferase activity | ECO |
protein serine/threonine kinase activity | ECO |
biological process | |
protein ubiquitination | ECO |
protein phosphorylation | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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