External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G61550:CDS:1 | 205 | Chr5: 24748325-24748529 | Arabidopsis thaliana |
AT5G61550:CDS:2 | 122 | Chr5: 24748633-24748754 | Arabidopsis thaliana |
AT5G61550:CDS:3 | 301 | Chr5: 24748849-24749149 | Arabidopsis thaliana |
AT5G61550:CDS:4 | 440 | Chr5: 24749227-24749666 | Arabidopsis thaliana |
AT5G61550:CDS:5 | 102 | Chr5: 24749790-24749891 | Arabidopsis thaliana |
AT5G61550:CDS:6 | 429 | Chr5: 24749979-24750407 | Arabidopsis thaliana |
AT5G61550:CDS:7 | 756 | Chr5: 24750525-24751280 | Arabidopsis thaliana |
AT5G61550:CDS:9 | 183 | Chr5: 24751376-24751558 | Arabidopsis thaliana |
AT5G61550:CDS:1.1 | 205 | Chr5: 24748325-24748529 | Arabidopsis thaliana |
AT5G61550:CDS:2.1 | 122 | Chr5: 24748633-24748754 | Arabidopsis thaliana |
AT5G61550:CDS:3.1 | 301 | Chr5: 24748849-24749149 | Arabidopsis thaliana |
AT5G61550:CDS:4.1 | 440 | Chr5: 24749227-24749666 | Arabidopsis thaliana |
AT5G61550:CDS:5.1 | 102 | Chr5: 24749790-24749891 | Arabidopsis thaliana |
AT5G61550:CDS:6.1 | 429 | Chr5: 24749979-24750407 | Arabidopsis thaliana |
AT5G61550:CDS:7.1 | 756 | Chr5: 24750525-24751280 | Arabidopsis thaliana |
AT5G61550:CDS:9.1 | 183 | Chr5: 24751376-24751558 | Arabidopsis thaliana |
AT5G61550:CDS:1.2 | 205 | Chr5: 24748325-24748529 | Arabidopsis thaliana |
AT5G61550:CDS:2.2 | 122 | Chr5: 24748633-24748754 | Arabidopsis thaliana |
AT5G61550:CDS:3.2 | 301 | Chr5: 24748849-24749149 | Arabidopsis thaliana |
AT5G61550:CDS:4.2 | 440 | Chr5: 24749227-24749666 | Arabidopsis thaliana |
AT5G61550:CDS:5.2 | 102 | Chr5: 24749790-24749891 | Arabidopsis thaliana |
AT5G61550:CDS:6.2 | 429 | Chr5: 24749979-24750407 | Arabidopsis thaliana |
AT5G61550:CDS:7.2 | 756 | Chr5: 24750525-24751280 | Arabidopsis thaliana |
AT5G61550:CDS:8 | 179 | Chr5: 24751376-24751554 | Arabidopsis thaliana |
AT5G61550:CDS:10 | 49 | Chr5: 24751757-24751805 | Arabidopsis thaliana |
AT5G61550:CDS:1.3 | 205 | Chr5: 24748325-24748529 | Arabidopsis thaliana |
AT5G61550:CDS:2.3 | 122 | Chr5: 24748633-24748754 | Arabidopsis thaliana |
AT5G61550:CDS:3.3 | 301 | Chr5: 24748849-24749149 | Arabidopsis thaliana |
AT5G61550:CDS:4.3 | 440 | Chr5: 24749227-24749666 | Arabidopsis thaliana |
AT5G61550:CDS:5.3 | 102 | Chr5: 24749790-24749891 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G09015:exon:1 | 212 | Chr5: 24747856-24748067 | Arabidopsis thaliana |
AT5G61550:exon:1 | 137 | Chr5: 24748023-24748159 | Arabidopsis thaliana |
AT5G61550:exon:16 | 380 | Chr5: 24751376-24751755 | Arabidopsis thaliana |
AT5G61550:exon:2 | 111 | Chr5: 24748049-24748159 | Arabidopsis thaliana |
AT5G61550:exon:5 | 242 | Chr5: 24748288-24748529 | Arabidopsis thaliana |
AT5G61550:exon:15 | 361 | Chr5: 24751376-24751736 | Arabidopsis thaliana |
AT5G61550:exon:3 | 58 | Chr5: 24748102-24748159 | Arabidopsis thaliana |
AT5G61550:exon:6 | 213 | Chr5: 24748317-24748529 | Arabidopsis thaliana |
AT5G61550:exon:13 | 179 | Chr5: 24751376-24751554 | Arabidopsis thaliana |
AT5G61550:exon:17 | 115 | Chr5: 24751757-24751871 | Arabidopsis thaliana |
AT5G61550:exon:4 | 280 | Chr5: 24748250-24748529 | Arabidopsis thaliana |
AT5G61550:exon:7 | 122 | Chr5: 24748633-24748754 | Arabidopsis thaliana |
AT5G61550:exon:8 | 301 | Chr5: 24748849-24749149 | Arabidopsis thaliana |
AT5G61550:exon:9 | 440 | Chr5: 24749227-24749666 | Arabidopsis thaliana |
AT5G61550:exon:10 | 102 | Chr5: 24749790-24749891 | Arabidopsis thaliana |
AT5G61550:exon:11 | 429 | Chr5: 24749979-24750407 | Arabidopsis thaliana |
AT5G61550:exon:12 | 756 | Chr5: 24750525-24751280 | Arabidopsis thaliana |
AT5G61550:exon:14 | 327 | Chr5: 24751376-24751702 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G61550:five_prime_UTR:1 | 137 | Chr5: 24748023-24748159 | Arabidopsis thaliana |
AT5G61550:five_prime_UTR:2 | 111 | Chr5: 24748049-24748159 | Arabidopsis thaliana |
AT5G61550:five_prime_UTR:5 | 37 | Chr5: 24748288-24748324 | Arabidopsis thaliana |
AT5G61550:five_prime_UTR:3 | 58 | Chr5: 24748102-24748159 | Arabidopsis thaliana |
AT5G61550:five_prime_UTR:6 | 8 | Chr5: 24748317-24748324 | Arabidopsis thaliana |
AT5G61550:five_prime_UTR:4 | 75 | Chr5: 24748250-24748324 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G09015 | AT5G09015 | 212 | Chr5: 24747856-24748067 | A. thaliana | None;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G61550.1 | 2880 | Chr5: 24748023-24751755 |
AT5G61550.3 | 2864 | Chr5: 24748049-24751736 |
AT5G61550.2 | 2715 | Chr5: 24748102-24751871 |
AT5G61550.4 | 2757 | Chr5: 24748250-24751702 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G61550:three_prime_UTR:3 | 197 | Chr5: 24751559-24751755 | Arabidopsis thaliana |
AT5G61550:three_prime_UTR:2 | 178 | Chr5: 24751559-24751736 | Arabidopsis thaliana |
AT5G61550:three_prime_UTR:4 | 66 | Chr5: 24751806-24751871 | Arabidopsis thaliana |
AT5G61550:three_prime_UTR:1 | 144 | Chr5: 24751559-24751702 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
F4K3J3_ARATH PUB52_ARATH | function | Functions as an E3 ubiquitin ligase. |
F4K3J3_ARATH PUB52_ARATH | pathway | Protein modification; protein ubiquitination. |
PUB52_ARATH | similarity | Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
ATP binding | ECO |
protein serine kinase activity | ECO |
ubiquitin-protein transferase activity | ECO |
protein serine/threonine kinase activity | ECO |
biological process | |
protein ubiquitination | ECO |
protein phosphorylation | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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