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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 40, Exons: 17, Five Prime UTRs: 4, mRNAs: 3, Three Prime UTRs: 2, Transposable Elements: 2, Transposon Fragments: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G61330:CDS:15 | 127 | Chr5: 24657287-24657413 | Arabidopsis thaliana |
AT5G61330:CDS:14 | 85 | Chr5: 24657506-24657590 | Arabidopsis thaliana |
AT5G61330:CDS:13 | 100 | Chr5: 24657717-24657816 | Arabidopsis thaliana |
AT5G61330:CDS:12 | 33 | Chr5: 24657921-24657953 | Arabidopsis thaliana |
AT5G61330:CDS:11 | 96 | Chr5: 24658067-24658162 | Arabidopsis thaliana |
AT5G61330:CDS:10 | 103 | Chr5: 24658248-24658350 | Arabidopsis thaliana |
AT5G61330:CDS:9 | 79 | Chr5: 24658503-24658581 | Arabidopsis thaliana |
AT5G61330:CDS:8 | 43 | Chr5: 24658666-24658708 | Arabidopsis thaliana |
AT5G61330:CDS:7 | 111 | Chr5: 24658819-24658929 | Arabidopsis thaliana |
AT5G61330:CDS:6 | 75 | Chr5: 24659007-24659081 | Arabidopsis thaliana |
AT5G61330:CDS:5 | 73 | Chr5: 24659214-24659286 | Arabidopsis thaliana |
AT5G61330:CDS:4 | 305 | Chr5: 24659634-24659938 | Arabidopsis thaliana |
AT5G61330:CDS:3 | 81 | Chr5: 24660023-24660103 | Arabidopsis thaliana |
AT5G61330:CDS:15.1 | 127 | Chr5: 24657287-24657413 | Arabidopsis thaliana |
AT5G61330:CDS:14.1 | 85 | Chr5: 24657506-24657590 | Arabidopsis thaliana |
AT5G61330:CDS:13.1 | 100 | Chr5: 24657717-24657816 | Arabidopsis thaliana |
AT5G61330:CDS:12.1 | 33 | Chr5: 24657921-24657953 | Arabidopsis thaliana |
AT5G61330:CDS:11.1 | 96 | Chr5: 24658067-24658162 | Arabidopsis thaliana |
AT5G61330:CDS:10.1 | 103 | Chr5: 24658248-24658350 | Arabidopsis thaliana |
AT5G61330:CDS:9.1 | 79 | Chr5: 24658503-24658581 | Arabidopsis thaliana |
AT5G61330:CDS:8.1 | 43 | Chr5: 24658666-24658708 | Arabidopsis thaliana |
AT5G61330:CDS:7.1 | 111 | Chr5: 24658819-24658929 | Arabidopsis thaliana |
AT5G61330:CDS:6.1 | 75 | Chr5: 24659007-24659081 | Arabidopsis thaliana |
AT5G61330:CDS:5.1 | 73 | Chr5: 24659214-24659286 | Arabidopsis thaliana |
AT5G61330:CDS:4.1 | 305 | Chr5: 24659634-24659938 | Arabidopsis thaliana |
AT5G61330:CDS:2 | 98 | Chr5: 24660023-24660120 | Arabidopsis thaliana |
AT5G61330:CDS:1 | 16 | Chr5: 24660320-24660335 | Arabidopsis thaliana |
AT5G61330:CDS:15.2 | 127 | Chr5: 24657287-24657413 | Arabidopsis thaliana |
AT5G61330:CDS:14.2 | 85 | Chr5: 24657506-24657590 | Arabidopsis thaliana |
AT5G61330:CDS:13.2 | 100 | Chr5: 24657717-24657816 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G61330:exon:1 | 337 | Chr5: 24660905-24661241 | Arabidopsis thaliana |
AT5G61330:exon:17 | 317 | Chr5: 24657097-24657413 | Arabidopsis thaliana |
AT5G61330:exon:4 | 98 | Chr5: 24660023-24660120 | Arabidopsis thaliana |
AT5G61330:exon:2 | 922 | Chr5: 24660320-24661241 | Arabidopsis thaliana |
AT5G61330:exon:16 | 315 | Chr5: 24657099-24657413 | Arabidopsis thaliana |
AT5G61330:exon:15 | 85 | Chr5: 24657506-24657590 | Arabidopsis thaliana |
AT5G61330:exon:14 | 100 | Chr5: 24657717-24657816 | Arabidopsis thaliana |
AT5G61330:exon:13 | 33 | Chr5: 24657921-24657953 | Arabidopsis thaliana |
AT5G61330:exon:12 | 96 | Chr5: 24658067-24658162 | Arabidopsis thaliana |
AT5G61330:exon:11 | 103 | Chr5: 24658248-24658350 | Arabidopsis thaliana |
AT5G61330:exon:10 | 79 | Chr5: 24658503-24658581 | Arabidopsis thaliana |
AT5G61330:exon:9 | 43 | Chr5: 24658666-24658708 | Arabidopsis thaliana |
AT5G61330:exon:8 | 111 | Chr5: 24658819-24658929 | Arabidopsis thaliana |
AT5G61330:exon:7 | 75 | Chr5: 24659007-24659081 | Arabidopsis thaliana |
AT5G61330:exon:6 | 73 | Chr5: 24659214-24659286 | Arabidopsis thaliana |
AT5G61330:exon:5 | 305 | Chr5: 24659634-24659938 | Arabidopsis thaliana |
AT5G61330:exon:3 | 209 | Chr5: 24660023-24660231 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G61330:five_prime_UTR:4 | 17 | Chr5: 24660104-24660120 | Arabidopsis thaliana |
AT5G61330:five_prime_UTR:1 | 337 | Chr5: 24660905-24661241 | Arabidopsis thaliana |
AT5G61330:five_prime_UTR:2 | 906 | Chr5: 24660336-24661241 | Arabidopsis thaliana |
AT5G61330:five_prime_UTR:3 | 128 | Chr5: 24660104-24660231 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G61330.1 | 1855 | Chr5: 24657097-24661241 |
AT5G61330.2 | 2440 | Chr5: 24657097-24661241 |
AT5G61330.3 | 1627 | Chr5: 24657099-24660231 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G61330:three_prime_UTR:2 | 190 | Chr5: 24657097-24657286 | Arabidopsis thaliana |
AT5G61330:three_prime_UTR:1 | 188 | Chr5: 24657099-24657286 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE88740 | 279 | Chr5: 24659627-24659905 | Arabidopsis thaliana |
AT5TE88745 | 175 | Chr5: 24660147-24660321 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE88740:transposon_fragment:1 | 279 | Chr5: 24659627-24659905 | Arabidopsis thaliana |
AT5TE88745:transposon_fragment:1 | 175 | Chr5: 24660147-24660321 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A1P8BD18_ARATH A0A654GD02_ARATH | similarity | Belongs to the AATF family. |
Function
Gene Ontology
cellular component | |
---|---|
nucleolus | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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