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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 18, Exons: 13, Five Prime UTRs: 4, mRNAs: 5, Three Prime UTRs: 3, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G60130:CDS:9 | 261 | Chr5: 24211871-24212131 | Arabidopsis thaliana |
AT5G60130:CDS:6 | 639 | Chr5: 24212216-24212854 | Arabidopsis thaliana |
AT5G60130:CDS:4 | 3 | Chr5: 24212956-24212958 | Arabidopsis thaliana |
AT5G60130:CDS:9.1 | 261 | Chr5: 24211871-24212131 | Arabidopsis thaliana |
AT5G60130:CDS:6.1 | 639 | Chr5: 24212216-24212854 | Arabidopsis thaliana |
AT5G60130:CDS:3 | 71 | Chr5: 24212956-24213026 | Arabidopsis thaliana |
AT5G60130:CDS:1 | 10 | Chr5: 24213103-24213112 | Arabidopsis thaliana |
AT5G60130:CDS:9.2 | 261 | Chr5: 24211871-24212131 | Arabidopsis thaliana |
AT5G60130:CDS:6.2 | 639 | Chr5: 24212216-24212854 | Arabidopsis thaliana |
AT5G60130:CDS:2 | 72 | Chr5: 24212956-24213027 | Arabidopsis thaliana |
AT5G60130:CDS:9.3 | 261 | Chr5: 24211871-24212131 | Arabidopsis thaliana |
AT5G60130:CDS:7 | 96 | Chr5: 24212216-24212311 | Arabidopsis thaliana |
AT5G60130:CDS:5 | 465 | Chr5: 24212390-24212854 | Arabidopsis thaliana |
AT5G60130:CDS:3.1 | 71 | Chr5: 24212956-24213026 | Arabidopsis thaliana |
AT5G60130:CDS:1.1 | 10 | Chr5: 24213103-24213112 | Arabidopsis thaliana |
AT5G60130:CDS:8 | 654 | Chr5: 24212201-24212854 | Arabidopsis thaliana |
AT5G60130:CDS:3.2 | 71 | Chr5: 24212956-24213026 | Arabidopsis thaliana |
AT5G60130:CDS:1.2 | 10 | Chr5: 24213103-24213112 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G60130:exon:13 | 343 | Chr5: 24211789-24212131 | Arabidopsis thaliana |
AT5G60130:exon:4 | 431 | Chr5: 24212956-24213386 | Arabidopsis thaliana |
AT5G60130:exon:12 | 290 | Chr5: 24211842-24212131 | Arabidopsis thaliana |
AT5G60130:exon:1 | 284 | Chr5: 24213103-24213386 | Arabidopsis thaliana |
AT5G60130:exon:8 | 639 | Chr5: 24212216-24212854 | Arabidopsis thaliana |
AT5G60130:exon:5 | 72 | Chr5: 24212956-24213027 | Arabidopsis thaliana |
AT5G60130:exon:11 | 261 | Chr5: 24211871-24212131 | Arabidopsis thaliana |
AT5G60130:exon:9 | 96 | Chr5: 24212216-24212311 | Arabidopsis thaliana |
AT5G60130:exon:7 | 465 | Chr5: 24212390-24212854 | Arabidopsis thaliana |
AT5G60130:exon:3 | 62 | Chr5: 24213103-24213164 | Arabidopsis thaliana |
AT5G60130:exon:10 | 690 | Chr5: 24212165-24212854 | Arabidopsis thaliana |
AT5G60130:exon:6 | 71 | Chr5: 24212956-24213026 | Arabidopsis thaliana |
AT5G60130:exon:2 | 92 | Chr5: 24213103-24213194 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G60130:five_prime_UTR:4 | 428 | Chr5: 24212959-24213386 | Arabidopsis thaliana |
AT5G60130:five_prime_UTR:1 | 274 | Chr5: 24213113-24213386 | Arabidopsis thaliana |
AT5G60130:five_prime_UTR:3 | 52 | Chr5: 24213113-24213164 | Arabidopsis thaliana |
AT5G60130:five_prime_UTR:2 | 82 | Chr5: 24213113-24213194 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G60130.3 | 1413 | Chr5: 24211789-24213386 |
AT5G60130.1 | 1284 | Chr5: 24211842-24213386 |
AT5G60130.4 | 972 | Chr5: 24211871-24213027 |
AT5G60130.2 | 955 | Chr5: 24211871-24213164 |
AT5G60130.5 | 853 | Chr5: 24212165-24213194 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G60130:three_prime_UTR:3 | 82 | Chr5: 24211789-24211870 | Arabidopsis thaliana |
AT5G60130:three_prime_UTR:2 | 29 | Chr5: 24211842-24211870 | Arabidopsis thaliana |
AT5G60130:three_prime_UTR:1 | 36 | Chr5: 24212165-24212200 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE87100 | 295 | Chr5: 24212273-24212567 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE87100:transposon_fragment:1 | 295 | Chr5: 24212273-24212567 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
DNA binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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