External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 14, Exons: 10, Five Prime UTRs: 3, mRNAs: 4, Three Prime UTRs: 7, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G59050:CDS:8 | 155 | Chr5: 23839494-23839648 | Arabidopsis thaliana |
AT5G59050:CDS:7 | 108 | Chr5: 23839965-23840072 | Arabidopsis thaliana |
AT5G59050:CDS:5 | 223 | Chr5: 23841606-23841828 | Arabidopsis thaliana |
AT5G59050:CDS:2 | 225 | Chr5: 23841978-23842202 | Arabidopsis thaliana |
AT5G59050:CDS:1 | 228 | Chr5: 23842292-23842519 | Arabidopsis thaliana |
AT5G59050:CDS:6 | 228 | Chr5: 23841601-23841828 | Arabidopsis thaliana |
AT5G59050:CDS:2.1 | 225 | Chr5: 23841978-23842202 | Arabidopsis thaliana |
AT5G59050:CDS:1.1 | 228 | Chr5: 23842292-23842519 | Arabidopsis thaliana |
AT5G59050:CDS:4 | 354 | Chr5: 23841849-23842202 | Arabidopsis thaliana |
AT5G59050:CDS:1.2 | 228 | Chr5: 23842292-23842519 | Arabidopsis thaliana |
AT5G59050:CDS:8.1 | 155 | Chr5: 23839494-23839648 | Arabidopsis thaliana |
AT5G59050:CDS:7.1 | 108 | Chr5: 23839965-23840072 | Arabidopsis thaliana |
AT5G59050:CDS:5.1 | 223 | Chr5: 23841606-23841828 | Arabidopsis thaliana |
AT5G59050:CDS:3 | 90 | Chr5: 23841978-23842067 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G59050:exon:10 | 541 | Chr5: 23839108-23839648 | Arabidopsis thaliana |
AT5G59050:exon:6 | 1469 | Chr5: 23840360-23841828 | Arabidopsis thaliana |
AT5G59050:exon:4 | 225 | Chr5: 23841978-23842202 | Arabidopsis thaliana |
AT5G59050:exon:1 | 667 | Chr5: 23842292-23842958 | Arabidopsis thaliana |
AT5G59050:exon:7 | 2238 | Chr5: 23839965-23842202 | Arabidopsis thaliana |
AT5G59050:exon:2 | 386 | Chr5: 23842292-23842677 | Arabidopsis thaliana |
AT5G59050:exon:9 | 492 | Chr5: 23839157-23839648 | Arabidopsis thaliana |
AT5G59050:exon:8 | 108 | Chr5: 23839965-23840072 | Arabidopsis thaliana |
AT5G59050:exon:5 | 223 | Chr5: 23841606-23841828 | Arabidopsis thaliana |
AT5G59050:exon:3 | 883 | Chr5: 23841978-23842860 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G59050:five_prime_UTR:1 | 439 | Chr5: 23842520-23842958 | Arabidopsis thaliana |
AT5G59050:five_prime_UTR:2 | 158 | Chr5: 23842520-23842677 | Arabidopsis thaliana |
AT5G59050:five_prime_UTR:3 | 793 | Chr5: 23842068-23842860 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G59050.1 | 1764 | Chr5: 23839108-23842958 |
AT5G59050.3 | 3010 | Chr5: 23839108-23842958 |
AT5G59050.2 | 3116 | Chr5: 23839157-23842677 |
AT5G59050.4 | 1706 | Chr5: 23839157-23842860 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G59050:three_prime_UTR:7 | 386 | Chr5: 23839108-23839493 | Arabidopsis thaliana |
AT5G59050:three_prime_UTR:6 | 541 | Chr5: 23839108-23839648 | Arabidopsis thaliana |
AT5G59050:three_prime_UTR:3 | 108 | Chr5: 23839965-23840072 | Arabidopsis thaliana |
AT5G59050:three_prime_UTR:1 | 1241 | Chr5: 23840360-23841600 | Arabidopsis thaliana |
AT5G59050:three_prime_UTR:4 | 492 | Chr5: 23839157-23839648 | Arabidopsis thaliana |
AT5G59050:three_prime_UTR:2 | 1884 | Chr5: 23839965-23841848 | Arabidopsis thaliana |
AT5G59050:three_prime_UTR:5 | 337 | Chr5: 23839157-23839493 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE85750 | 454 | Chr5: 23842823-23843276 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE85750:transposon_fragment:1 | 454 | Chr5: 23842823-23843276 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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