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Gene : AT5G58575 A. thaliana

DB identifier  ? AT5G58575 Secondary Identifier  ? locus:505006700
Brief Description  SAGA-associated factor-like protein
TAIR Computational Description  SAGA-associated factor-like protein;(source:Araport11)
TAIR Curator Summary  Component of the deubiquitination module of the SAGA complex.
TAIR Short Description  NULL
TAIR Aliases  SGF11

0 Gene Rifs

1 Organism

7 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2111  
Location: Chr5:23673533-23675643

Gene models - AT5G58575 AT5G58575

? Gene models

Transcripts: 2  Exons: 9  Introns: 7 

Overlapping Features

? Genome features that overlap coordinates of this Gene

9 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
SGF11_ARATH function Component of a deubiquitination module (DUB module) that specifically deubiquinates monoubiquinated histone H2B (H2Bub) (PubMed:29588169, PubMed:30192741). Does not seem to be a component of the TREX-2 complex (PubMed:29588169). Seems to act independently of the SAGA multiprotein complex (PubMed:30192741). The DUB module is responsible for the major H2Bub deubiquitinase activity in Arabidopsis (PubMed:30192741).
SGF11_ARATH similarity Belongs to the SGF11 family.
SGF11_ARATH subcellular location Displays a rather patchy distribution forming a punctuated pattern in the euchromatin (PubMed:30192741). Does not localize in the heterochromatic chromocenters or nucleolus (PubMed:30192741).

1 Proteins

Function

Gene Ontology

cellular component
DUBm complex  ? ECO  
SAGA-type complex  ? ECO  
nucleoplasm  ? ECO  
molecular function
metal ion binding  ? ECO  
biological process
chromatin organization  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets