External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 14, Exons: 11, Five Prime UTRs: 3, Genes: 2, mRNAs: 4, Three Prime UTRs: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G58540:CDS:4 | 133 | Chr5: 23663906-23664038 | Arabidopsis thaliana |
AT5G58540:CDS:5 | 191 | Chr5: 23664123-23664313 | Arabidopsis thaliana |
AT5G58540:CDS:6 | 133 | Chr5: 23664393-23664525 | Arabidopsis thaliana |
AT5G58540:CDS:7 | 569 | Chr5: 23664614-23665182 | Arabidopsis thaliana |
AT5G58540:CDS:1 | 91 | Chr5: 23663400-23663490 | Arabidopsis thaliana |
AT5G58540:CDS:2 | 471 | Chr5: 23663568-23664038 | Arabidopsis thaliana |
AT5G58540:CDS:5.1 | 191 | Chr5: 23664123-23664313 | Arabidopsis thaliana |
AT5G58540:CDS:6.1 | 133 | Chr5: 23664393-23664525 | Arabidopsis thaliana |
AT5G58540:CDS:7.1 | 569 | Chr5: 23664614-23665182 | Arabidopsis thaliana |
AT5G58540:CDS:1.1 | 91 | Chr5: 23663400-23663490 | Arabidopsis thaliana |
AT5G58540:CDS:3 | 462 | Chr5: 23663577-23664038 | Arabidopsis thaliana |
AT5G58540:CDS:5.2 | 191 | Chr5: 23664123-23664313 | Arabidopsis thaliana |
AT5G58540:CDS:6.2 | 133 | Chr5: 23664393-23664525 | Arabidopsis thaliana |
AT5G58540:CDS:7.2 | 569 | Chr5: 23664614-23665182 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G08835:exon:1 | 487 | Chr5: 23663075-23663561 | Arabidopsis thaliana |
AT5G58540:exon:1 | 903 | Chr5: 23663136-23664038 | Arabidopsis thaliana |
AT5G58540:exon:2 | 311 | Chr5: 23663180-23663490 | Arabidopsis thaliana |
AT5G58540:exon:4 | 471 | Chr5: 23663568-23664038 | Arabidopsis thaliana |
AT5G58540:exon:8 | 703 | Chr5: 23664614-23665316 | Arabidopsis thaliana |
AT5G58540:exon:3 | 128 | Chr5: 23663363-23663490 | Arabidopsis thaliana |
AT5G58540:exon:5 | 462 | Chr5: 23663577-23664038 | Arabidopsis thaliana |
AT5G58540:exon:6 | 191 | Chr5: 23664123-23664313 | Arabidopsis thaliana |
AT5G58540:exon:7 | 133 | Chr5: 23664393-23664525 | Arabidopsis thaliana |
AT5G58540:exon:9 | 704 | Chr5: 23664614-23665317 | Arabidopsis thaliana |
AT5G58550:exon:4 | 407 | Chr5: 23665295-23665701 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G58540:five_prime_UTR:1 | 770 | Chr5: 23663136-23663905 | Arabidopsis thaliana |
AT5G58540:five_prime_UTR:2 | 220 | Chr5: 23663180-23663399 | Arabidopsis thaliana |
AT5G58540:five_prime_UTR:3 | 37 | Chr5: 23663363-23663399 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G08835 | AT5G08835 | 487 | Chr5: 23663075-23663561 | A. thaliana | Natural antisense transcript overlaps with AT5G58540;(source:Araport11) | NULL | ||||
AT5G58550 | locus:2171243 | EOL2 | ETO1-like 2 | 3592 | Chr5: 23665295-23668886 | A. thaliana | ETO1-like 2;(source:Araport11) | Encodes a paralog of ETO1, which is a negative regulator of ACS5 (a key enzyme in ethylene biosynthesis pathway). EOL2 also interacts with and inhibits the activity of ACS5. | ETO1-like 2 | EOL2 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G58540.3 | 1930 | Chr5: 23663136-23665316 |
AT5G58540.1 | 1809 | Chr5: 23663180-23665316 |
AT5G58540.2 | 1618 | Chr5: 23663363-23665317 |
AT5G58550.1 | 3346 | Chr5: 23665295-23668886 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G58540:three_prime_UTR:1 | 134 | Chr5: 23665183-23665316 | Arabidopsis thaliana |
AT5G58540:three_prime_UTR:2 | 135 | Chr5: 23665183-23665317 | Arabidopsis thaliana |
AT5G58550:three_prime_UTR:1 | 156 | Chr5: 23665295-23665450 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
molecular function | |
ATP binding | ECO |
protein kinase activity | ECO |
biological process | |
protein phosphorylation | ECO |
Interactions
Interaction Network
Show the following interaction types:
Reset view
Show in table format
Export graph
- Click on a gene to get more info about it.
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
---|
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...