External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G58450:CDS:1 | 52 | Chr5: 23626826-23626877 | Arabidopsis thaliana |
AT5G58450:CDS:2 | 17 | Chr5: 23626954-23626970 | Arabidopsis thaliana |
AT5G58450:CDS:3 | 267 | Chr5: 23627094-23627360 | Arabidopsis thaliana |
AT5G58450:CDS:5 | 157 | Chr5: 23627450-23627606 | Arabidopsis thaliana |
AT5G58450:CDS:6 | 119 | Chr5: 23627692-23627810 | Arabidopsis thaliana |
AT5G58450:CDS:7 | 75 | Chr5: 23627895-23627969 | Arabidopsis thaliana |
AT5G58450:CDS:8 | 94 | Chr5: 23628048-23628141 | Arabidopsis thaliana |
AT5G58450:CDS:9 | 119 | Chr5: 23628235-23628353 | Arabidopsis thaliana |
AT5G58450:CDS:10 | 71 | Chr5: 23628551-23628621 | Arabidopsis thaliana |
AT5G58450:CDS:11 | 142 | Chr5: 23628775-23628916 | Arabidopsis thaliana |
AT5G58450:CDS:12 | 176 | Chr5: 23629025-23629200 | Arabidopsis thaliana |
AT5G58450:CDS:13 | 200 | Chr5: 23629301-23629500 | Arabidopsis thaliana |
AT5G58450:CDS:14 | 131 | Chr5: 23629656-23629786 | Arabidopsis thaliana |
AT5G58450:CDS:15 | 77 | Chr5: 23629874-23629950 | Arabidopsis thaliana |
AT5G58450:CDS:16 | 75 | Chr5: 23630052-23630126 | Arabidopsis thaliana |
AT5G58450:CDS:17 | 193 | Chr5: 23630220-23630412 | Arabidopsis thaliana |
AT5G58450:CDS:18 | 120 | Chr5: 23630509-23630628 | Arabidopsis thaliana |
AT5G58450:CDS:19 | 139 | Chr5: 23630723-23630861 | Arabidopsis thaliana |
AT5G58450:CDS:20 | 44 | Chr5: 23630935-23630978 | Arabidopsis thaliana |
AT5G58450:CDS:21 | 255 | Chr5: 23631056-23631310 | Arabidopsis thaliana |
AT5G58450:CDS:22 | 675 | Chr5: 23631397-23632071 | Arabidopsis thaliana |
AT5G58450:CDS:4 | 147 | Chr5: 23627214-23627360 | Arabidopsis thaliana |
AT5G58450:CDS:5.1 | 157 | Chr5: 23627450-23627606 | Arabidopsis thaliana |
AT5G58450:CDS:6.1 | 119 | Chr5: 23627692-23627810 | Arabidopsis thaliana |
AT5G58450:CDS:7.1 | 75 | Chr5: 23627895-23627969 | Arabidopsis thaliana |
AT5G58450:CDS:8.1 | 94 | Chr5: 23628048-23628141 | Arabidopsis thaliana |
AT5G58450:CDS:9.1 | 119 | Chr5: 23628235-23628353 | Arabidopsis thaliana |
AT5G58450:CDS:10.1 | 71 | Chr5: 23628551-23628621 | Arabidopsis thaliana |
AT5G58450:CDS:11.1 | 142 | Chr5: 23628775-23628916 | Arabidopsis thaliana |
AT5G58450:CDS:12.1 | 176 | Chr5: 23629025-23629200 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G58440:exon:1 | 1400 | Chr5: 23625558-23626957 | Arabidopsis thaliana |
AT5G58450:exon:1 | 52 | Chr5: 23626826-23626877 | Arabidopsis thaliana |
AT5G58450:exon:2 | 17 | Chr5: 23626954-23626970 | Arabidopsis thaliana |
AT5G58450:exon:4 | 267 | Chr5: 23627094-23627360 | Arabidopsis thaliana |
AT5G58450:exon:3 | 302 | Chr5: 23627059-23627360 | Arabidopsis thaliana |
AT5G58450:exon:5 | 157 | Chr5: 23627450-23627606 | Arabidopsis thaliana |
AT5G58450:exon:6 | 119 | Chr5: 23627692-23627810 | Arabidopsis thaliana |
AT5G58450:exon:7 | 75 | Chr5: 23627895-23627969 | Arabidopsis thaliana |
AT5G58450:exon:8 | 94 | Chr5: 23628048-23628141 | Arabidopsis thaliana |
AT5G58450:exon:9 | 119 | Chr5: 23628235-23628353 | Arabidopsis thaliana |
AT5G58450:exon:10 | 71 | Chr5: 23628551-23628621 | Arabidopsis thaliana |
AT5G58450:exon:11 | 142 | Chr5: 23628775-23628916 | Arabidopsis thaliana |
AT5G58450:exon:12 | 176 | Chr5: 23629025-23629200 | Arabidopsis thaliana |
AT5G58450:exon:13 | 200 | Chr5: 23629301-23629500 | Arabidopsis thaliana |
AT5G58450:exon:14 | 131 | Chr5: 23629656-23629786 | Arabidopsis thaliana |
AT5G58450:exon:15 | 77 | Chr5: 23629874-23629950 | Arabidopsis thaliana |
AT5G58450:exon:16 | 75 | Chr5: 23630052-23630126 | Arabidopsis thaliana |
AT5G58450:exon:17 | 193 | Chr5: 23630220-23630412 | Arabidopsis thaliana |
AT5G58450:exon:18 | 120 | Chr5: 23630509-23630628 | Arabidopsis thaliana |
AT5G58450:exon:19 | 139 | Chr5: 23630723-23630861 | Arabidopsis thaliana |
AT5G58450:exon:20 | 44 | Chr5: 23630935-23630978 | Arabidopsis thaliana |
AT5G58450:exon:21 | 255 | Chr5: 23631056-23631310 | Arabidopsis thaliana |
AT5G58450:exon:22 | 827 | Chr5: 23631397-23632223 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G58440:five_prime_UTR:1 | 281 | Chr5: 23626677-23626957 | Arabidopsis thaliana |
AT5G58450:five_prime_UTR:1 | 155 | Chr5: 23627059-23627213 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G58440 | locus:2171218 | SNX2a | sorting nexin 2A | 3164 | Chr5: 23623794-23626957 | A. thaliana | sorting nexin 2A;(source:Araport11) | NULL | sorting nexin 2A | SNX2a |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G58440.1 | 2405 | Chr5: 23623794-23626957 |
AT5G58450.1 | 3350 | Chr5: 23626826-23632223 |
AT5G58450.2 | 3316 | Chr5: 23627059-23632223 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G58450:three_prime_UTR:1 | 152 | Chr5: 23632072-23632223 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
NAA25_ARATH | function | Auxiliary subunit of the NatB N-alpha-acetyltransferase complex. Required for flowering time regulation and for vegetative and reproductive plant development. |
A0A1P8BDV1_ARATH NAA25_ARATH | similarity | Belongs to the MDM20/NAA25 family. |
NAA25_ARATH | tissue specificity | Ubiquitously expressed, with a higher expression in vascular bundles, hydathodes, leaf primordia and the base of the trichomes. |
Function
Gene Ontology
cellular component | |
---|---|
cytoplasm | ECO |
plasmodesma | ECO |
NatB complex | ECO |
molecular function | |
No terms in this category. | |
biological process | |
N-terminal peptidyl-methionine acetylation | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
---|
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...