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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G58140:CDS:1 | 509 | Chr5: 23524771-23525279 | Arabidopsis thaliana |
AT5G58140:CDS:2 | 183 | Chr5: 23525403-23525585 | Arabidopsis thaliana |
AT5G58140:CDS:3 | 92 | Chr5: 23525667-23525758 | Arabidopsis thaliana |
AT5G58140:CDS:4 | 208 | Chr5: 23525885-23526092 | Arabidopsis thaliana |
AT5G58140:CDS:5 | 217 | Chr5: 23526495-23526711 | Arabidopsis thaliana |
AT5G58140:CDS:6 | 71 | Chr5: 23526874-23526944 | Arabidopsis thaliana |
AT5G58140:CDS:7 | 107 | Chr5: 23527074-23527180 | Arabidopsis thaliana |
AT5G58140:CDS:8 | 50 | Chr5: 23527267-23527316 | Arabidopsis thaliana |
AT5G58140:CDS:9 | 105 | Chr5: 23527407-23527511 | Arabidopsis thaliana |
AT5G58140:CDS:10 | 60 | Chr5: 23527592-23527651 | Arabidopsis thaliana |
AT5G58140:CDS:11 | 90 | Chr5: 23527727-23527816 | Arabidopsis thaliana |
AT5G58140:CDS:12 | 77 | Chr5: 23527892-23527968 | Arabidopsis thaliana |
AT5G58140:CDS:13 | 85 | Chr5: 23528066-23528150 | Arabidopsis thaliana |
AT5G58140:CDS:14 | 81 | Chr5: 23528247-23528327 | Arabidopsis thaliana |
AT5G58140:CDS:15 | 104 | Chr5: 23528407-23528510 | Arabidopsis thaliana |
AT5G58140:CDS:17 | 50 | Chr5: 23528726-23528775 | Arabidopsis thaliana |
AT5G58140:CDS:18 | 107 | Chr5: 23528912-23529018 | Arabidopsis thaliana |
AT5G58140:CDS:19 | 123 | Chr5: 23529096-23529218 | Arabidopsis thaliana |
AT5G58140:CDS:20 | 52 | Chr5: 23529317-23529368 | Arabidopsis thaliana |
AT5G58140:CDS:21 | 113 | Chr5: 23529453-23529565 | Arabidopsis thaliana |
AT5G58140:CDS:23 | 141 | Chr5: 23529646-23529786 | Arabidopsis thaliana |
AT5G58140:CDS:25 | 123 | Chr5: 23529871-23529993 | Arabidopsis thaliana |
AT5G58140:CDS:1.1 | 509 | Chr5: 23524771-23525279 | Arabidopsis thaliana |
AT5G58140:CDS:2.1 | 183 | Chr5: 23525403-23525585 | Arabidopsis thaliana |
AT5G58140:CDS:3.1 | 92 | Chr5: 23525667-23525758 | Arabidopsis thaliana |
AT5G58140:CDS:4.1 | 208 | Chr5: 23525885-23526092 | Arabidopsis thaliana |
AT5G58140:CDS:5.1 | 217 | Chr5: 23526495-23526711 | Arabidopsis thaliana |
AT5G58140:CDS:6.1 | 71 | Chr5: 23526874-23526944 | Arabidopsis thaliana |
AT5G58140:CDS:7.1 | 107 | Chr5: 23527074-23527180 | Arabidopsis thaliana |
AT5G58140:CDS:8.1 | 50 | Chr5: 23527267-23527316 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G58140:exon:1 | 269 | Chr5: 23523825-23524093 | Arabidopsis thaliana |
AT5G58140:exon:6 | 335 | Chr5: 23524211-23524545 | Arabidopsis thaliana |
AT5G58140:exon:2 | 243 | Chr5: 23523851-23524093 | Arabidopsis thaliana |
AT5G58140:exon:3 | 416 | Chr5: 23524130-23524545 | Arabidopsis thaliana |
AT5G58140:exon:5 | 1150 | Chr5: 23524130-23525279 | Arabidopsis thaliana |
AT5G58140:exon:33 | 123 | Chr5: 23529871-23529993 | Arabidopsis thaliana |
AT5G58140:exon:4 | 420 | Chr5: 23524130-23524549 | Arabidopsis thaliana |
AT5G58140:exon:32 | 141 | Chr5: 23529646-23529786 | Arabidopsis thaliana |
AT5G58140:exon:7 | 63 | Chr5: 23524487-23524549 | Arabidopsis thaliana |
AT5G58140:exon:9 | 557 | Chr5: 23524723-23525279 | Arabidopsis thaliana |
AT5G58140:exon:24 | 369 | Chr5: 23528407-23528775 | Arabidopsis thaliana |
AT5G58140:exon:28 | 305 | Chr5: 23529096-23529400 | Arabidopsis thaliana |
AT5G58140:exon:8 | 758 | Chr5: 23524522-23525279 | Arabidopsis thaliana |
AT5G58140:exon:10 | 183 | Chr5: 23525403-23525585 | Arabidopsis thaliana |
AT5G58140:exon:11 | 92 | Chr5: 23525667-23525758 | Arabidopsis thaliana |
AT5G58140:exon:12 | 208 | Chr5: 23525885-23526092 | Arabidopsis thaliana |
AT5G58140:exon:13 | 217 | Chr5: 23526495-23526711 | Arabidopsis thaliana |
AT5G58140:exon:14 | 71 | Chr5: 23526874-23526944 | Arabidopsis thaliana |
AT5G58140:exon:15 | 107 | Chr5: 23527074-23527180 | Arabidopsis thaliana |
AT5G58140:exon:16 | 50 | Chr5: 23527267-23527316 | Arabidopsis thaliana |
AT5G58140:exon:17 | 105 | Chr5: 23527407-23527511 | Arabidopsis thaliana |
AT5G58140:exon:18 | 60 | Chr5: 23527592-23527651 | Arabidopsis thaliana |
AT5G58140:exon:19 | 90 | Chr5: 23527727-23527816 | Arabidopsis thaliana |
AT5G58140:exon:20 | 77 | Chr5: 23527892-23527968 | Arabidopsis thaliana |
AT5G58140:exon:21 | 85 | Chr5: 23528066-23528150 | Arabidopsis thaliana |
AT5G58140:exon:22 | 81 | Chr5: 23528247-23528327 | Arabidopsis thaliana |
AT5G58140:exon:23 | 104 | Chr5: 23528407-23528510 | Arabidopsis thaliana |
AT5G58140:exon:25 | 50 | Chr5: 23528726-23528775 | Arabidopsis thaliana |
AT5G58140:exon:26 | 107 | Chr5: 23528912-23529018 | Arabidopsis thaliana |
AT5G58140:exon:27 | 123 | Chr5: 23529096-23529218 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G58140:five_prime_UTR:1 | 269 | Chr5: 23523825-23524093 | Arabidopsis thaliana |
AT5G58140:five_prime_UTR:6 | 335 | Chr5: 23524211-23524545 | Arabidopsis thaliana |
AT5G58140:five_prime_UTR:2 | 243 | Chr5: 23523851-23524093 | Arabidopsis thaliana |
AT5G58140:five_prime_UTR:3 | 416 | Chr5: 23524130-23524545 | Arabidopsis thaliana |
AT5G58140:five_prime_UTR:5 | 641 | Chr5: 23524130-23524770 | Arabidopsis thaliana |
AT5G58140:five_prime_UTR:4 | 420 | Chr5: 23524130-23524549 | Arabidopsis thaliana |
AT5G58140:five_prime_UTR:7 | 63 | Chr5: 23524487-23524549 | Arabidopsis thaliana |
AT5G58140:five_prime_UTR:9 | 48 | Chr5: 23524723-23524770 | Arabidopsis thaliana |
AT5G58140:five_prime_UTR:8 | 249 | Chr5: 23524522-23524770 | Arabidopsis thaliana |
AT5G58150:five_prime_UTR:1 | 267 | Chr5: 23532574-23532840 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G58150 | locus:2161303 | AT5G58150 | 2760 | Chr5: 23530081-23532840 | A. thaliana | Leucine-rich repeat protein kinase family protein;(source:Araport11) | NULL | Leucine-rich repeat protein kinase family protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G58140.2 | 6518 | Chr5: 23523825-23533111 |
AT5G58140.5 | 3039 | Chr5: 23523851-23529993 |
AT5G58140.7 | 3212 | Chr5: 23524130-23529993 |
AT5G58140.6 | 3389 | Chr5: 23524130-23529993 |
AT5G58140.1 | 6334 | Chr5: 23524130-23533111 |
AT5G58140.4 | 2827 | Chr5: 23524487-23529400 |
AT5G58140.3 | 6110 | Chr5: 23524522-23533111 |
AT5G58150.1 | 2760 | Chr5: 23530081-23532840 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G58140:three_prime_UTR:5 | 3118 | Chr5: 23529994-23533111 | Arabidopsis thaliana |
AT5G58140:three_prime_UTR:1 | 234 | Chr5: 23528542-23528775 | Arabidopsis thaliana |
AT5G58140:three_prime_UTR:2 | 107 | Chr5: 23528912-23529018 | Arabidopsis thaliana |
AT5G58140:three_prime_UTR:3 | 305 | Chr5: 23529096-23529400 | Arabidopsis thaliana |
AT5G58140:three_prime_UTR:4 | 3164 | Chr5: 23529948-23533111 | Arabidopsis thaliana |
AT5G58150:three_prime_UTR:1 | 135 | Chr5: 23530081-23530215 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
PHOT2_ARATH PHOT2_ARATH-2 | function | Protein kinase that acts as a blue light photoreceptor in a signal-transduction pathway for photo-induced movements. Phosphorylates BLUS1, a kinase involved in stomatal opening. Mediates calcium spiking of extra- and intracellular origins in response to blue light. Involved in hypocotyl phototropism. Contributes to the chloroplast accumulation in low blue light and mediates their translocation (avoidance response) at high fluence. Regulates stomata opening and photomorphogenesis response of leaf tissue. Not involved in hypocotyl elongation inhibition, anthocyanin accumulation or cotyledon opening. |
PHOT2_ARATH PHOT2_ARATH-2 | similarity | Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. |
PHOT2_ARATH PHOT2_ARATH-2 | tissue specificity | Expressed in leaves, stems and flowers, and to a lower extent in roots. |
Function
Gene Ontology
cellular component | |
---|---|
plastid | ECO |
cytoplasm | ECO |
plasma membrane | ECO |
membrane | ECO |
Golgi apparatus | ECO |
nucleus | ECO |
molecular function | |
blue light photoreceptor activity | ECO |
protein serine/threonine kinase activity | ECO |
FMN binding | ECO |
protein serine kinase activity | ECO |
identical protein binding | ECO |
kinase activity | ECO |
ATP binding | ECO |
biological process | |
phototropism | ECO |
negative regulation of anion channel activity by blue light | ECO |
circadian rhythm | ECO |
protein autophosphorylation | ECO |
protein phosphorylation | ECO |
chloroplast relocation | ECO |
response to blue light | ECO |
stomatal movement | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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