External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G56610:CDS:6 | 81 | Chr5: 22918057-22918137 | Arabidopsis thaliana |
AT5G56610:CDS:6.1 | 81 | Chr5: 22918057-22918137 | Arabidopsis thaliana |
AT5G56620:CDS:9 | 40 | Chr5: 22918236-22918275 | Arabidopsis thaliana |
AT5G56620:CDS:7 | 59 | Chr5: 22918365-22918423 | Arabidopsis thaliana |
AT5G56620:CDS:5 | 84 | Chr5: 22918550-22918633 | Arabidopsis thaliana |
AT5G56620:CDS:4 | 243 | Chr5: 22918925-22919167 | Arabidopsis thaliana |
AT5G56620:CDS:3 | 512 | Chr5: 22919616-22920127 | Arabidopsis thaliana |
AT5G56620:CDS:2 | 193 | Chr5: 22920685-22920877 | Arabidopsis thaliana |
AT5G56620:CDS:1 | 114 | Chr5: 22921026-22921139 | Arabidopsis thaliana |
AT5G56620:CDS:8 | 63 | Chr5: 22918361-22918423 | Arabidopsis thaliana |
AT5G56620:CDS:5.1 | 84 | Chr5: 22918550-22918633 | Arabidopsis thaliana |
AT5G56620:CDS:4.1 | 243 | Chr5: 22918925-22919167 | Arabidopsis thaliana |
AT5G56620:CDS:3.1 | 512 | Chr5: 22919616-22920127 | Arabidopsis thaliana |
AT5G56620:CDS:2.1 | 193 | Chr5: 22920685-22920877 | Arabidopsis thaliana |
AT5G56620:CDS:1.1 | 114 | Chr5: 22921026-22921139 | Arabidopsis thaliana |
AT5G56620:CDS:6 | 99 | Chr5: 22918521-22918619 | Arabidopsis thaliana |
AT5G56620:CDS:4.2 | 243 | Chr5: 22918925-22919167 | Arabidopsis thaliana |
AT5G56620:CDS:3.2 | 512 | Chr5: 22919616-22920127 | Arabidopsis thaliana |
AT5G56620:CDS:2.2 | 193 | Chr5: 22920685-22920877 | Arabidopsis thaliana |
AT5G56620:CDS:1.2 | 114 | Chr5: 22921026-22921139 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G56610:exon:8 | 412 | Chr5: 22918057-22918468 | Arabidopsis thaliana |
AT5G56610:exon:7 | 282 | Chr5: 22918057-22918338 | Arabidopsis thaliana |
AT5G56620:exon:11 | 342 | Chr5: 22917934-22918275 | Arabidopsis thaliana |
AT5G56620:exon:9 | 59 | Chr5: 22918365-22918423 | Arabidopsis thaliana |
AT5G56620:exon:10 | 490 | Chr5: 22917934-22918423 | Arabidopsis thaliana |
AT5G56620:exon:7 | 84 | Chr5: 22918550-22918633 | Arabidopsis thaliana |
AT5G56620:exon:2 | 155 | Chr5: 22921026-22921180 | Arabidopsis thaliana |
AT5G56620:exon:1 | 29 | Chr5: 22921471-22921499 | Arabidopsis thaliana |
AT5G56620:exon:8 | 99 | Chr5: 22918521-22918619 | Arabidopsis thaliana |
AT5G56620:exon:6 | 243 | Chr5: 22918925-22919167 | Arabidopsis thaliana |
AT5G56620:exon:5 | 512 | Chr5: 22919616-22920127 | Arabidopsis thaliana |
AT5G56620:exon:4 | 193 | Chr5: 22920685-22920877 | Arabidopsis thaliana |
AT5G56620:exon:3 | 114 | Chr5: 22921026-22921139 | Arabidopsis thaliana |
AT5G08605:exon:1 | 243 | Chr5: 22921496-22921738 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G56620:five_prime_UTR:2 | 41 | Chr5: 22921140-22921180 | Arabidopsis thaliana |
AT5G56620:five_prime_UTR:1 | 29 | Chr5: 22921471-22921499 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G56610 | locus:2165016 | AT5G56610 | 1777 | Chr5: 22916692-22918468 | A. thaliana | Phosphotyrosine protein phosphatases superfamily protein;(source:Araport11) | Encodes a phosphatidylglycerophosphate (PGP) phosphatase involved in the synthesis of plastidial Phosphatidylglycerol (PG) in conjunction with PGPP1 and PTPMT1 in root. For PTPMT2.1, lower expression levels were detected in leaf and stem as compared to the other tissues. | Phosphotyrosine protein phosphatases superfamily protein | PTPMT2 | |
AT5G08605 | AT5G08605 | 243 | Chr5: 22921496-22921738 | A. thaliana | None;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G56610.1 | 1064 | Chr5: 22916692-22918468 |
AT5G56610.2 | 772 | Chr5: 22916731-22918338 |
AT5G56620.3 | 1617 | Chr5: 22917934-22921499 |
AT5G56620.2 | 1706 | Chr5: 22917934-22921499 |
AT5G56620.1 | 1161 | Chr5: 22918521-22921139 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G56610:three_prime_UTR:2 | 331 | Chr5: 22918138-22918468 | Arabidopsis thaliana |
AT5G56610:three_prime_UTR:1 | 201 | Chr5: 22918138-22918338 | Arabidopsis thaliana |
AT5G56620:three_prime_UTR:2 | 302 | Chr5: 22917934-22918235 | Arabidopsis thaliana |
AT5G56620:three_prime_UTR:1 | 427 | Chr5: 22917934-22918360 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
DNA-binding transcription factor activity | ECO |
transcription cis-regulatory region binding | ECO |
biological process | |
regulation of DNA-templated transcription | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...