External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 26, Exons: 25, Five Prime UTRs: 12, mRNAs: 11, Three Prime UTRs: 10, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G55550:CDS:6 | 14 | Chr5: 22502077-22502090 | Arabidopsis thaliana |
AT5G55550:CDS:3 | 1111 | Chr5: 22502185-22503295 | Arabidopsis thaliana |
AT5G55550:CDS:1 | 222 | Chr5: 22503437-22503658 | Arabidopsis thaliana |
AT5G55550:CDS:5 | 1161 | Chr5: 22502135-22503295 | Arabidopsis thaliana |
AT5G55550:CDS:1.1 | 222 | Chr5: 22503437-22503658 | Arabidopsis thaliana |
AT5G55550:CDS:6.1 | 14 | Chr5: 22502077-22502090 | Arabidopsis thaliana |
AT5G55550:CDS:3.1 | 1111 | Chr5: 22502185-22503295 | Arabidopsis thaliana |
AT5G55550:CDS:1.2 | 222 | Chr5: 22503437-22503658 | Arabidopsis thaliana |
AT5G55550:CDS:6.2 | 14 | Chr5: 22502077-22502090 | Arabidopsis thaliana |
AT5G55550:CDS:3.2 | 1111 | Chr5: 22502185-22503295 | Arabidopsis thaliana |
AT5G55550:CDS:1.3 | 222 | Chr5: 22503437-22503658 | Arabidopsis thaliana |
AT5G55550:CDS:5.1 | 1161 | Chr5: 22502135-22503295 | Arabidopsis thaliana |
AT5G55550:CDS:1.4 | 222 | Chr5: 22503437-22503658 | Arabidopsis thaliana |
AT5G55550:CDS:6.3 | 14 | Chr5: 22502077-22502090 | Arabidopsis thaliana |
AT5G55550:CDS:3.3 | 1111 | Chr5: 22502185-22503295 | Arabidopsis thaliana |
AT5G55550:CDS:1.5 | 222 | Chr5: 22503437-22503658 | Arabidopsis thaliana |
AT5G55550:CDS:5.2 | 1161 | Chr5: 22502135-22503295 | Arabidopsis thaliana |
AT5G55550:CDS:1.6 | 222 | Chr5: 22503437-22503658 | Arabidopsis thaliana |
AT5G55550:CDS:6.4 | 14 | Chr5: 22502077-22502090 | Arabidopsis thaliana |
AT5G55550:CDS:3.4 | 1111 | Chr5: 22502185-22503295 | Arabidopsis thaliana |
AT5G55550:CDS:1.7 | 222 | Chr5: 22503437-22503658 | Arabidopsis thaliana |
AT5G55550:CDS:6.5 | 14 | Chr5: 22502077-22502090 | Arabidopsis thaliana |
AT5G55550:CDS:2 | 1474 | Chr5: 22502185-22503658 | Arabidopsis thaliana |
AT5G55550:CDS:5.3 | 1161 | Chr5: 22502135-22503295 | Arabidopsis thaliana |
AT5G55550:CDS:1.8 | 222 | Chr5: 22503437-22503658 | Arabidopsis thaliana |
AT5G55550:CDS:4 | 1524 | Chr5: 22502135-22503658 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G55550:exon:25 | 556 | Chr5: 22501535-22502090 | Arabidopsis thaliana |
AT5G55550:exon:1 | 218 | Chr5: 22503927-22504144 | Arabidopsis thaliana |
AT5G55550:exon:23 | 1760 | Chr5: 22501536-22503295 | Arabidopsis thaliana |
AT5G55550:exon:24 | 555 | Chr5: 22501536-22502090 | Arabidopsis thaliana |
AT5G55550:exon:4 | 150 | Chr5: 22503927-22504076 | Arabidopsis thaliana |
AT5G55550:exon:22 | 376 | Chr5: 22501543-22501918 | Arabidopsis thaliana |
AT5G55550:exon:17 | 45 | Chr5: 22502046-22502090 | Arabidopsis thaliana |
AT5G55550:exon:6 | 126 | Chr5: 22503927-22504052 | Arabidopsis thaliana |
AT5G55550:exon:21 | 1710 | Chr5: 22501586-22503295 | Arabidopsis thaliana |
AT5G55550:exon:11 | 410 | Chr5: 22503437-22503846 | Arabidopsis thaliana |
AT5G55550:exon:3 | 168 | Chr5: 22503927-22504094 | Arabidopsis thaliana |
AT5G55550:exon:20 | 494 | Chr5: 22501597-22502090 | Arabidopsis thaliana |
AT5G55550:exon:19 | 1699 | Chr5: 22501597-22503295 | Arabidopsis thaliana |
AT5G55550:exon:10 | 628 | Chr5: 22503437-22504064 | Arabidopsis thaliana |
AT5G55550:exon:14 | 1111 | Chr5: 22502185-22503295 | Arabidopsis thaliana |
AT5G55550:exon:7 | 344 | Chr5: 22503757-22504100 | Arabidopsis thaliana |
AT5G55550:exon:18 | 175 | Chr5: 22501916-22502090 | Arabidopsis thaliana |
AT5G55550:exon:13 | 1485 | Chr5: 22502185-22503669 | Arabidopsis thaliana |
AT5G55550:exon:2 | 174 | Chr5: 22503927-22504100 | Arabidopsis thaliana |
AT5G55550:exon:16 | 1232 | Chr5: 22502064-22503295 | Arabidopsis thaliana |
AT5G55550:exon:12 | 233 | Chr5: 22503437-22503669 | Arabidopsis thaliana |
AT5G55550:exon:8 | 308 | Chr5: 22503757-22504064 | Arabidopsis thaliana |
AT5G55550:exon:15 | 1606 | Chr5: 22502064-22503669 | Arabidopsis thaliana |
AT5G55550:exon:9 | 90 | Chr5: 22503757-22503846 | Arabidopsis thaliana |
AT5G55550:exon:5 | 138 | Chr5: 22503927-22504064 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G55550:five_prime_UTR:1 | 218 | Chr5: 22503927-22504144 | Arabidopsis thaliana |
AT5G55550:five_prime_UTR:4 | 150 | Chr5: 22503927-22504076 | Arabidopsis thaliana |
AT5G55550:five_prime_UTR:6 | 126 | Chr5: 22503927-22504052 | Arabidopsis thaliana |
AT5G55550:five_prime_UTR:11 | 188 | Chr5: 22503659-22503846 | Arabidopsis thaliana |
AT5G55550:five_prime_UTR:3 | 168 | Chr5: 22503927-22504094 | Arabidopsis thaliana |
AT5G55550:five_prime_UTR:10 | 406 | Chr5: 22503659-22504064 | Arabidopsis thaliana |
AT5G55550:five_prime_UTR:7 | 344 | Chr5: 22503757-22504100 | Arabidopsis thaliana |
AT5G55550:five_prime_UTR:2 | 174 | Chr5: 22503927-22504100 | Arabidopsis thaliana |
AT5G55550:five_prime_UTR:8 | 308 | Chr5: 22503757-22504064 | Arabidopsis thaliana |
AT5G55550:five_prime_UTR:12 | 11 | Chr5: 22503659-22503669 | Arabidopsis thaliana |
AT5G55550:five_prime_UTR:9 | 90 | Chr5: 22503757-22503846 | Arabidopsis thaliana |
AT5G55550:five_prime_UTR:5 | 138 | Chr5: 22503927-22504064 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G55550.1 | 2208 | Chr5: 22501535-22504144 |
AT5G55550.3 | 2233 | Chr5: 22501536-22504076 |
AT5G55550.5 | 2226 | Chr5: 22501536-22504076 |
AT5G55550.4 | 1981 | Chr5: 22501543-22504052 |
AT5G55550.6 | 2288 | Chr5: 22501586-22504094 |
AT5G55550.7 | 2233 | Chr5: 22501597-22504064 |
AT5G55550.2 | 2327 | Chr5: 22501597-22504064 |
AT5G55550.9 | 1863 | Chr5: 22501916-22504100 |
AT5G55550.8 | 1924 | Chr5: 22501916-22504100 |
AT5G55550.11 | 1773 | Chr5: 22502064-22504064 |
AT5G55550.10 | 1834 | Chr5: 22502064-22504064 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G55550:three_prime_UTR:10 | 542 | Chr5: 22501535-22502076 | Arabidopsis thaliana |
AT5G55550:three_prime_UTR:8 | 599 | Chr5: 22501536-22502134 | Arabidopsis thaliana |
AT5G55550:three_prime_UTR:9 | 541 | Chr5: 22501536-22502076 | Arabidopsis thaliana |
AT5G55550:three_prime_UTR:7 | 376 | Chr5: 22501543-22501918 | Arabidopsis thaliana |
AT5G55550:three_prime_UTR:2 | 31 | Chr5: 22502046-22502076 | Arabidopsis thaliana |
AT5G55550:three_prime_UTR:6 | 549 | Chr5: 22501586-22502134 | Arabidopsis thaliana |
AT5G55550:three_prime_UTR:5 | 480 | Chr5: 22501597-22502076 | Arabidopsis thaliana |
AT5G55550:three_prime_UTR:4 | 538 | Chr5: 22501597-22502134 | Arabidopsis thaliana |
AT5G55550:three_prime_UTR:3 | 161 | Chr5: 22501916-22502076 | Arabidopsis thaliana |
AT5G55550:three_prime_UTR:1 | 71 | Chr5: 22502064-22502134 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE81005 | 957 | Chr5: 22500600-22501556 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE81005:transposon_fragment:1 | 957 | Chr5: 22500600-22501556 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
mRNA binding | ECO |
biological process | |
regulation of translation | ECO |
Interactions
Interaction Network
Show the following interaction types:
Reset view
Show in table format
Export graph
- Click on a gene to get more info about it.
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
---|
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...