External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G55490:CDS:9 | 256 | Chr5: 22478822-22479077 | Arabidopsis thaliana |
AT5G55490:CDS:7 | 145 | Chr5: 22479175-22479319 | Arabidopsis thaliana |
AT5G55490:CDS:5 | 187 | Chr5: 22479414-22479600 | Arabidopsis thaliana |
AT5G55490:CDS:3 | 127 | Chr5: 22479688-22479814 | Arabidopsis thaliana |
AT5G55490:CDS:2 | 588 | Chr5: 22479911-22480498 | Arabidopsis thaliana |
AT5G55490:CDS:1 | 479 | Chr5: 22480593-22481071 | Arabidopsis thaliana |
AT5G55490:CDS:6 | 195 | Chr5: 22479406-22479600 | Arabidopsis thaliana |
AT5G55490:CDS:3.1 | 127 | Chr5: 22479688-22479814 | Arabidopsis thaliana |
AT5G55490:CDS:2.1 | 588 | Chr5: 22479911-22480498 | Arabidopsis thaliana |
AT5G55490:CDS:1.1 | 479 | Chr5: 22480593-22481071 | Arabidopsis thaliana |
AT5G55490:CDS:4 | 148 | Chr5: 22479667-22479814 | Arabidopsis thaliana |
AT5G55490:CDS:2.2 | 588 | Chr5: 22479911-22480498 | Arabidopsis thaliana |
AT5G55490:CDS:1.2 | 479 | Chr5: 22480593-22481071 | Arabidopsis thaliana |
AT5G55490:CDS:9.1 | 256 | Chr5: 22478822-22479077 | Arabidopsis thaliana |
AT5G55490:CDS:7.1 | 145 | Chr5: 22479175-22479319 | Arabidopsis thaliana |
AT5G55490:CDS:5.1 | 187 | Chr5: 22479414-22479600 | Arabidopsis thaliana |
AT5G55490:CDS:3.2 | 127 | Chr5: 22479688-22479814 | Arabidopsis thaliana |
AT5G55490:CDS:2.3 | 588 | Chr5: 22479911-22480498 | Arabidopsis thaliana |
AT5G55490:CDS:1.3 | 479 | Chr5: 22480593-22481071 | Arabidopsis thaliana |
AT5G55490:CDS:8 | 167 | Chr5: 22479153-22479319 | Arabidopsis thaliana |
AT5G55490:CDS:5.2 | 187 | Chr5: 22479414-22479600 | Arabidopsis thaliana |
AT5G55490:CDS:3.3 | 127 | Chr5: 22479688-22479814 | Arabidopsis thaliana |
AT5G55490:CDS:2.4 | 588 | Chr5: 22479911-22480498 | Arabidopsis thaliana |
AT5G55490:CDS:1.4 | 479 | Chr5: 22480593-22481071 | Arabidopsis thaliana |
AT5G55490:CDS:4.1 | 148 | Chr5: 22479667-22479814 | Arabidopsis thaliana |
AT5G55490:CDS:2.5 | 588 | Chr5: 22479911-22480498 | Arabidopsis thaliana |
AT5G55490:CDS:1.5 | 479 | Chr5: 22480593-22481071 | Arabidopsis thaliana |
AT5G55490:CDS:4.2 | 148 | Chr5: 22479667-22479814 | Arabidopsis thaliana |
AT5G55490:CDS:2.6 | 588 | Chr5: 22479911-22480498 | Arabidopsis thaliana |
AT5G55490:CDS:1.6 | 479 | Chr5: 22480593-22481071 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G55490:exon:12 | 1103 | Chr5: 22478712-22479814 | Arabidopsis thaliana |
AT5G55490:exon:3 | 556 | Chr5: 22480593-22481148 | Arabidopsis thaliana |
AT5G55490:exon:11 | 145 | Chr5: 22479175-22479319 | Arabidopsis thaliana |
AT5G55490:exon:2 | 30 | Chr5: 22481886-22481915 | Arabidopsis thaliana |
AT5G55490:exon:8 | 187 | Chr5: 22479414-22479600 | Arabidopsis thaliana |
AT5G55490:exon:9 | 640 | Chr5: 22479175-22479814 | Arabidopsis thaliana |
AT5G55490:exon:14 | 608 | Chr5: 22478712-22479319 | Arabidopsis thaliana |
AT5G55490:exon:7 | 401 | Chr5: 22479414-22479814 | Arabidopsis thaliana |
AT5G55490:exon:15 | 366 | Chr5: 22478712-22479077 | Arabidopsis thaliana |
AT5G55490:exon:10 | 426 | Chr5: 22479175-22479600 | Arabidopsis thaliana |
AT5G55490:exon:13 | 889 | Chr5: 22478712-22479600 | Arabidopsis thaliana |
AT5G55490:exon:6 | 127 | Chr5: 22479688-22479814 | Arabidopsis thaliana |
AT5G55490:exon:5 | 588 | Chr5: 22479911-22480498 | Arabidopsis thaliana |
AT5G55490:exon:4 | 530 | Chr5: 22480593-22481122 | Arabidopsis thaliana |
AT5G55490:exon:1 | 52 | Chr5: 22481886-22481937 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G55490:five_prime_UTR:3 | 77 | Chr5: 22481072-22481148 | Arabidopsis thaliana |
AT5G55490:five_prime_UTR:2 | 30 | Chr5: 22481886-22481915 | Arabidopsis thaliana |
AT5G55490:five_prime_UTR:4 | 51 | Chr5: 22481072-22481122 | Arabidopsis thaliana |
AT5G55490:five_prime_UTR:1 | 52 | Chr5: 22481886-22481937 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G55490.9 | 1969 | Chr5: 22478712-22481148 |
AT5G55490.6 | 2160 | Chr5: 22478712-22481148 |
AT5G55490.2 | 2247 | Chr5: 22478712-22481148 |
AT5G55490.1 | 1973 | Chr5: 22478712-22481915 |
AT5G55490.7 | 2092 | Chr5: 22478712-22481937 |
AT5G55490.5 | 2176 | Chr5: 22478712-22481937 |
AT5G55490.4 | 2179 | Chr5: 22478712-22481937 |
AT5G55490.8 | 2089 | Chr5: 22478712-22481937 |
AT5G55490.3 | 2186 | Chr5: 22478712-22481937 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G55490:three_prime_UTR:4 | 955 | Chr5: 22478712-22479666 | Arabidopsis thaliana |
AT5G55490:three_prime_UTR:9 | 110 | Chr5: 22478712-22478821 | Arabidopsis thaliana |
AT5G55490:three_prime_UTR:7 | 441 | Chr5: 22478712-22479152 | Arabidopsis thaliana |
AT5G55490:three_prime_UTR:2 | 492 | Chr5: 22479175-22479666 | Arabidopsis thaliana |
AT5G55490:three_prime_UTR:6 | 608 | Chr5: 22478712-22479319 | Arabidopsis thaliana |
AT5G55490:three_prime_UTR:1 | 253 | Chr5: 22479414-22479666 | Arabidopsis thaliana |
AT5G55490:three_prime_UTR:8 | 366 | Chr5: 22478712-22479077 | Arabidopsis thaliana |
AT5G55490:three_prime_UTR:3 | 231 | Chr5: 22479175-22479405 | Arabidopsis thaliana |
AT5G55490:three_prime_UTR:5 | 694 | Chr5: 22478712-22479405 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
GEX1_ARATH | function | Has a dual function during gametophyte development and early embryogenesis. Required for correct pollen maturation. |
GEX1_ARATH | tissue specificity | In tricellular pollen, expressed in mature sperm cells. Not expressed in bicellular or unicellular pollen. Detected in ovules, roots and guard cells. Expressed in the embryo sac before cellularization, in the egg cell after cellularization, in the zygote/embryo immediately after fertilization and in the pollen vegetative cell. |
Function
Gene Ontology
cellular component | |
---|---|
plasma membrane | ECO |
molecular function | |
identical protein binding | ECO |
biological process | |
pollen development | ECO |
embryo sac development | ECO |
embryo development ending in seed dormancy | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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