External Links
- Aracyc
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- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G55400:CDS:14 | 333 | Chr5: 22455535-22455867 | Arabidopsis thaliana |
AT5G55400:CDS:13 | 92 | Chr5: 22455955-22456046 | Arabidopsis thaliana |
AT5G55400:CDS:12 | 97 | Chr5: 22456156-22456252 | Arabidopsis thaliana |
AT5G55400:CDS:11 | 158 | Chr5: 22456346-22456503 | Arabidopsis thaliana |
AT5G55400:CDS:10 | 200 | Chr5: 22456604-22456803 | Arabidopsis thaliana |
AT5G55400:CDS:9 | 153 | Chr5: 22456891-22457043 | Arabidopsis thaliana |
AT5G55400:CDS:8 | 212 | Chr5: 22457124-22457335 | Arabidopsis thaliana |
AT5G55400:CDS:7 | 117 | Chr5: 22457512-22457628 | Arabidopsis thaliana |
AT5G55400:CDS:6 | 69 | Chr5: 22457715-22457783 | Arabidopsis thaliana |
AT5G55400:CDS:5 | 39 | Chr5: 22457859-22457897 | Arabidopsis thaliana |
AT5G55400:CDS:4 | 172 | Chr5: 22458000-22458171 | Arabidopsis thaliana |
AT5G55400:CDS:3 | 239 | Chr5: 22458278-22458516 | Arabidopsis thaliana |
AT5G55400:CDS:2 | 177 | Chr5: 22458603-22458779 | Arabidopsis thaliana |
AT5G55400:CDS:1 | 87 | Chr5: 22458864-22458950 | Arabidopsis thaliana |
AT5G55400:CDS:14.1 | 333 | Chr5: 22455535-22455867 | Arabidopsis thaliana |
AT5G55400:CDS:13.1 | 92 | Chr5: 22455955-22456046 | Arabidopsis thaliana |
AT5G55400:CDS:12.1 | 97 | Chr5: 22456156-22456252 | Arabidopsis thaliana |
AT5G55400:CDS:11.1 | 158 | Chr5: 22456346-22456503 | Arabidopsis thaliana |
AT5G55400:CDS:10.1 | 200 | Chr5: 22456604-22456803 | Arabidopsis thaliana |
AT5G55400:CDS:9.1 | 153 | Chr5: 22456891-22457043 | Arabidopsis thaliana |
AT5G55400:CDS:8.1 | 212 | Chr5: 22457124-22457335 | Arabidopsis thaliana |
AT5G55400:CDS:7.1 | 117 | Chr5: 22457512-22457628 | Arabidopsis thaliana |
AT5G55400:CDS:6.1 | 69 | Chr5: 22457715-22457783 | Arabidopsis thaliana |
AT5G55400:CDS:5.1 | 39 | Chr5: 22457859-22457897 | Arabidopsis thaliana |
AT5G55400:CDS:4.1 | 172 | Chr5: 22458000-22458171 | Arabidopsis thaliana |
AT5G55400:CDS:3.1 | 239 | Chr5: 22458278-22458516 | Arabidopsis thaliana |
AT5G55400:CDS:2.1 | 177 | Chr5: 22458603-22458779 | Arabidopsis thaliana |
AT5G55400:CDS:1.1 | 87 | Chr5: 22458864-22458950 | Arabidopsis thaliana |
AT5G55400:CDS:14.2 | 333 | Chr5: 22455535-22455867 | Arabidopsis thaliana |
AT5G55400:CDS:13.2 | 92 | Chr5: 22455955-22456046 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G55400:exon:19 | 499 | Chr5: 22455369-22455867 | Arabidopsis thaliana |
AT5G55400:exon:3 | 406 | Chr5: 22459096-22459501 | Arabidopsis thaliana |
AT5G55400:exon:18 | 486 | Chr5: 22455382-22455867 | Arabidopsis thaliana |
AT5G55400:exon:2 | 350 | Chr5: 22459249-22459598 | Arabidopsis thaliana |
AT5G55400:exon:17 | 450 | Chr5: 22455418-22455867 | Arabidopsis thaliana |
AT5G55400:exon:16 | 92 | Chr5: 22455955-22456046 | Arabidopsis thaliana |
AT5G55400:exon:15 | 97 | Chr5: 22456156-22456252 | Arabidopsis thaliana |
AT5G55400:exon:14 | 158 | Chr5: 22456346-22456503 | Arabidopsis thaliana |
AT5G55400:exon:13 | 200 | Chr5: 22456604-22456803 | Arabidopsis thaliana |
AT5G55400:exon:12 | 153 | Chr5: 22456891-22457043 | Arabidopsis thaliana |
AT5G55400:exon:11 | 212 | Chr5: 22457124-22457335 | Arabidopsis thaliana |
AT5G55400:exon:10 | 117 | Chr5: 22457512-22457628 | Arabidopsis thaliana |
AT5G55400:exon:9 | 69 | Chr5: 22457715-22457783 | Arabidopsis thaliana |
AT5G55400:exon:8 | 39 | Chr5: 22457859-22457897 | Arabidopsis thaliana |
AT5G55400:exon:7 | 172 | Chr5: 22458000-22458171 | Arabidopsis thaliana |
AT5G55400:exon:6 | 239 | Chr5: 22458278-22458516 | Arabidopsis thaliana |
AT5G55400:exon:5 | 177 | Chr5: 22458603-22458779 | Arabidopsis thaliana |
AT5G55400:exon:4 | 150 | Chr5: 22458864-22459013 | Arabidopsis thaliana |
AT5G55400:exon:1 | 97 | Chr5: 22459372-22459468 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G55400:five_prime_UTR:3 | 406 | Chr5: 22459096-22459501 | Arabidopsis thaliana |
AT5G55400:five_prime_UTR:2 | 350 | Chr5: 22459249-22459598 | Arabidopsis thaliana |
AT5G55400:five_prime_UTR:4 | 63 | Chr5: 22458951-22459013 | Arabidopsis thaliana |
AT5G55400:five_prime_UTR:1 | 97 | Chr5: 22459372-22459468 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G55400.1 | 2780 | Chr5: 22455369-22459501 |
AT5G55400.2 | 2711 | Chr5: 22455382-22459598 |
AT5G55400.3 | 2422 | Chr5: 22455418-22459468 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G55400:three_prime_UTR:3 | 166 | Chr5: 22455369-22455534 | Arabidopsis thaliana |
AT5G55400:three_prime_UTR:2 | 153 | Chr5: 22455382-22455534 | Arabidopsis thaliana |
AT5G55400:three_prime_UTR:1 | 117 | Chr5: 22455418-22455534 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
FIMB3_ARATH | function | Cross-links actin filaments (F-actin). Stabilizes and prevents F-actin depolymerization mediated by profilin. May regulate actin cytoarchitecture, cell cycle, cell division, cell elongation and cytoplasmic tractus. |
Function
Gene Ontology
cellular component | |
---|---|
plant-type vacuole | ECO |
cytoskeleton | ECO |
molecular function | |
metal ion binding | ECO |
actin filament binding | ECO |
biological process | |
actin filament network formation | ECO |
actin filament bundle assembly | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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