External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
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- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 12, Exons: 12, Five Prime UTR: 1, Gene: 1, mRNA: 1, miRNA: 1, miRNA Primary Transcript: 1, Three Prime UTR: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G54780:CDS:12 | 12 | Chr5: 22248696-22248707 | Arabidopsis thaliana |
AT5G54780:CDS:11 | 84 | Chr5: 22248794-22248877 | Arabidopsis thaliana |
AT5G54780:CDS:10 | 264 | Chr5: 22248953-22249216 | Arabidopsis thaliana |
AT5G54780:CDS:9 | 98 | Chr5: 22249327-22249424 | Arabidopsis thaliana |
AT5G54780:CDS:8 | 106 | Chr5: 22249525-22249630 | Arabidopsis thaliana |
AT5G54780:CDS:7 | 89 | Chr5: 22249731-22249819 | Arabidopsis thaliana |
AT5G54780:CDS:6 | 123 | Chr5: 22249917-22250039 | Arabidopsis thaliana |
AT5G54780:CDS:5 | 93 | Chr5: 22250123-22250215 | Arabidopsis thaliana |
AT5G54780:CDS:4 | 140 | Chr5: 22250299-22250438 | Arabidopsis thaliana |
AT5G54780:CDS:3 | 104 | Chr5: 22250544-22250647 | Arabidopsis thaliana |
AT5G54780:CDS:2 | 96 | Chr5: 22250839-22250934 | Arabidopsis thaliana |
AT5G54780:CDS:1 | 90 | Chr5: 22251603-22251692 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G54780:exon:12 | 339 | Chr5: 22248369-22248707 | Arabidopsis thaliana |
AT5G54780:exon:11 | 84 | Chr5: 22248794-22248877 | Arabidopsis thaliana |
AT5G54780:exon:10 | 264 | Chr5: 22248953-22249216 | Arabidopsis thaliana |
AT5G54780:exon:9 | 98 | Chr5: 22249327-22249424 | Arabidopsis thaliana |
AT5G54780:exon:8 | 106 | Chr5: 22249525-22249630 | Arabidopsis thaliana |
AT5G54780:exon:7 | 89 | Chr5: 22249731-22249819 | Arabidopsis thaliana |
AT5G54780:exon:6 | 123 | Chr5: 22249917-22250039 | Arabidopsis thaliana |
AT5G54780:exon:5 | 93 | Chr5: 22250123-22250215 | Arabidopsis thaliana |
AT5G54780:exon:4 | 140 | Chr5: 22250299-22250438 | Arabidopsis thaliana |
AT5G54780:exon:3 | 104 | Chr5: 22250544-22250647 | Arabidopsis thaliana |
AT5G54780:exon:2 | 96 | Chr5: 22250839-22250934 | Arabidopsis thaliana |
AT5G54780:exon:1 | 589 | Chr5: 22251603-22252191 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G54780:five_prime_UTR:1 | 499 | Chr5: 22251693-22252191 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G08255 | MIR2938 | 100 | Chr5: 22251822-22251921 | A. thaliana | microRNA ath-MIR2938 precursor;(source:Araport11) | NULL | ath-MIR2938 |
miRNA Primary Transcripts
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G08255.1 | 100 | Chr5: 22251822-22251921 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G54780:three_prime_UTR:1 | 327 | Chr5: 22248369-22248695 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...