Lists
This Gene is in one list:
External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53860:CDS:1 | 225 | Chr5: 21865353-21865577 | Arabidopsis thaliana |
AT5G53860:CDS:3 | 65 | Chr5: 21865932-21865996 | Arabidopsis thaliana |
AT5G53860:CDS:5 | 99 | Chr5: 21866133-21866231 | Arabidopsis thaliana |
AT5G53860:CDS:6 | 133 | Chr5: 21866433-21866565 | Arabidopsis thaliana |
AT5G53860:CDS:7 | 60 | Chr5: 21866783-21866842 | Arabidopsis thaliana |
AT5G53860:CDS:8 | 60 | Chr5: 21867010-21867069 | Arabidopsis thaliana |
AT5G53860:CDS:9 | 123 | Chr5: 21867159-21867281 | Arabidopsis thaliana |
AT5G53860:CDS:11 | 72 | Chr5: 21867641-21867712 | Arabidopsis thaliana |
AT5G53860:CDS:13 | 138 | Chr5: 21867824-21867961 | Arabidopsis thaliana |
AT5G53860:CDS:14 | 156 | Chr5: 21868048-21868203 | Arabidopsis thaliana |
AT5G53860:CDS:15 | 105 | Chr5: 21868290-21868394 | Arabidopsis thaliana |
AT5G53860:CDS:17 | 33 | Chr5: 21868544-21868576 | Arabidopsis thaliana |
AT5G53860:CDS:1.1 | 225 | Chr5: 21865353-21865577 | Arabidopsis thaliana |
AT5G53860:CDS:3.1 | 65 | Chr5: 21865932-21865996 | Arabidopsis thaliana |
AT5G53860:CDS:5.1 | 99 | Chr5: 21866133-21866231 | Arabidopsis thaliana |
AT5G53860:CDS:6.1 | 133 | Chr5: 21866433-21866565 | Arabidopsis thaliana |
AT5G53860:CDS:8.1 | 60 | Chr5: 21867010-21867069 | Arabidopsis thaliana |
AT5G53860:CDS:9.1 | 123 | Chr5: 21867159-21867281 | Arabidopsis thaliana |
AT5G53860:CDS:11.1 | 72 | Chr5: 21867641-21867712 | Arabidopsis thaliana |
AT5G53860:CDS:13.1 | 138 | Chr5: 21867824-21867961 | Arabidopsis thaliana |
AT5G53860:CDS:14.1 | 156 | Chr5: 21868048-21868203 | Arabidopsis thaliana |
AT5G53860:CDS:15.1 | 105 | Chr5: 21868290-21868394 | Arabidopsis thaliana |
AT5G53860:CDS:17.1 | 33 | Chr5: 21868544-21868576 | Arabidopsis thaliana |
AT5G53860:CDS:1.2 | 225 | Chr5: 21865353-21865577 | Arabidopsis thaliana |
AT5G53860:CDS:3.2 | 65 | Chr5: 21865932-21865996 | Arabidopsis thaliana |
AT5G53860:CDS:5.2 | 99 | Chr5: 21866133-21866231 | Arabidopsis thaliana |
AT5G53860:CDS:6.2 | 133 | Chr5: 21866433-21866565 | Arabidopsis thaliana |
AT5G53860:CDS:7.1 | 60 | Chr5: 21866783-21866842 | Arabidopsis thaliana |
AT5G53860:CDS:8.2 | 60 | Chr5: 21867010-21867069 | Arabidopsis thaliana |
AT5G53860:CDS:9.2 | 123 | Chr5: 21867159-21867281 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53850:exon:1 | 541 | Chr5: 21864610-21865150 | Arabidopsis thaliana |
AT5G53860:exon:1 | 509 | Chr5: 21865069-21865577 | Arabidopsis thaliana |
AT5G53860:exon:19 | 388 | Chr5: 21868544-21868931 | Arabidopsis thaliana |
AT5G53860:exon:11 | 111 | Chr5: 21867416-21867526 | Arabidopsis thaliana |
AT5G53860:exon:2 | 310 | Chr5: 21865268-21865577 | Arabidopsis thaliana |
AT5G53860:exon:4 | 65 | Chr5: 21865932-21865996 | Arabidopsis thaliana |
AT5G53860:exon:13 | 96 | Chr5: 21867824-21867919 | Arabidopsis thaliana |
AT5G53860:exon:17 | 21 | Chr5: 21868374-21868394 | Arabidopsis thaliana |
AT5G53860:exon:18 | 299 | Chr5: 21868544-21868842 | Arabidopsis thaliana |
AT5G53860:exon:3 | 322 | Chr5: 21865285-21865606 | Arabidopsis thaliana |
AT5G53860:exon:5 | 96 | Chr5: 21865932-21866027 | Arabidopsis thaliana |
AT5G53860:exon:6 | 99 | Chr5: 21866133-21866231 | Arabidopsis thaliana |
AT5G53860:exon:7 | 133 | Chr5: 21866433-21866565 | Arabidopsis thaliana |
AT5G53860:exon:8 | 60 | Chr5: 21866783-21866842 | Arabidopsis thaliana |
AT5G53860:exon:9 | 60 | Chr5: 21867010-21867069 | Arabidopsis thaliana |
AT5G53860:exon:10 | 123 | Chr5: 21867159-21867281 | Arabidopsis thaliana |
AT5G53860:exon:12 | 72 | Chr5: 21867641-21867712 | Arabidopsis thaliana |
AT5G53860:exon:14 | 138 | Chr5: 21867824-21867961 | Arabidopsis thaliana |
AT5G53860:exon:15 | 156 | Chr5: 21868048-21868203 | Arabidopsis thaliana |
AT5G53860:exon:16 | 105 | Chr5: 21868290-21868394 | Arabidopsis thaliana |
AT5G53860:exon:20 | 405 | Chr5: 21868544-21868948 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53850:five_prime_UTR:1 | 333 | Chr5: 21864818-21865150 | Arabidopsis thaliana |
AT5G53860:five_prime_UTR:1 | 284 | Chr5: 21865069-21865352 | Arabidopsis thaliana |
AT5G53860:five_prime_UTR:2 | 85 | Chr5: 21865268-21865352 | Arabidopsis thaliana |
AT5G53860:five_prime_UTR:3 | 68 | Chr5: 21865285-21865352 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G53850 | locus:2154664 | AT5G53850 | 4291 | Chr5: 21860860-21865150 | A. thaliana | haloacid dehalogenase-like hydrolase family protein;(source:Araport11) | Encodes a trifunctional dehydratase / enolase / phosphatase involved in the methionine salvage. | haloacid dehalogenase-like hydrolase family protein | DEP1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G53850.2 | 2072 | Chr5: 21860940-21865150 |
AT5G53860.2 | 1908 | Chr5: 21865069-21868931 |
AT5G53860.1 | 1560 | Chr5: 21865268-21868842 |
AT5G53860.4 | 1731 | Chr5: 21865268-21868842 |
AT5G53860.3 | 1338 | Chr5: 21865268-21868842 |
AT5G53860.5 | 1769 | Chr5: 21865285-21868948 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53860:three_prime_UTR:2 | 355 | Chr5: 21868577-21868931 | Arabidopsis thaliana |
AT5G53860:three_prime_UTR:1 | 266 | Chr5: 21868577-21868842 | Arabidopsis thaliana |
AT5G53860:three_prime_UTR:3 | 372 | Chr5: 21868577-21868948 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
chloroplast envelope | ECO |
chloroplast | ECO |
molecular function | |
No terms in this category. | |
biological process | |
regulation of leaf morphogenesis | ECO |
thylakoid membrane organization | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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