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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53550:CDS:1 | 373 | Chr5: 21756081-21756453 | Arabidopsis thaliana |
AT5G53550:CDS:2 | 176 | Chr5: 21756549-21756724 | Arabidopsis thaliana |
AT5G53550:CDS:4 | 98 | Chr5: 21756959-21757056 | Arabidopsis thaliana |
AT5G53550:CDS:5 | 135 | Chr5: 21757146-21757280 | Arabidopsis thaliana |
AT5G53550:CDS:6 | 190 | Chr5: 21757365-21757554 | Arabidopsis thaliana |
AT5G53550:CDS:7 | 118 | Chr5: 21757643-21757760 | Arabidopsis thaliana |
AT5G53550:CDS:8 | 938 | Chr5: 21757839-21758776 | Arabidopsis thaliana |
AT5G53550:CDS:1.1 | 373 | Chr5: 21756081-21756453 | Arabidopsis thaliana |
AT5G53550:CDS:2.1 | 176 | Chr5: 21756549-21756724 | Arabidopsis thaliana |
AT5G53550:CDS:4.1 | 98 | Chr5: 21756959-21757056 | Arabidopsis thaliana |
AT5G53550:CDS:5.1 | 135 | Chr5: 21757146-21757280 | Arabidopsis thaliana |
AT5G53550:CDS:6.1 | 190 | Chr5: 21757365-21757554 | Arabidopsis thaliana |
AT5G53550:CDS:7.1 | 118 | Chr5: 21757643-21757760 | Arabidopsis thaliana |
AT5G53550:CDS:8.1 | 938 | Chr5: 21757839-21758776 | Arabidopsis thaliana |
AT5G53550:CDS:3 | 63 | Chr5: 21756662-21756724 | Arabidopsis thaliana |
AT5G53550:CDS:4.2 | 98 | Chr5: 21756959-21757056 | Arabidopsis thaliana |
AT5G53550:CDS:5.2 | 135 | Chr5: 21757146-21757280 | Arabidopsis thaliana |
AT5G53550:CDS:6.2 | 190 | Chr5: 21757365-21757554 | Arabidopsis thaliana |
AT5G53550:CDS:7.2 | 118 | Chr5: 21757643-21757760 | Arabidopsis thaliana |
AT5G53550:CDS:8.2 | 938 | Chr5: 21757839-21758776 | Arabidopsis thaliana |
AT5G53550:CDS:1.2 | 373 | Chr5: 21756081-21756453 | Arabidopsis thaliana |
AT5G53550:CDS:2.2 | 176 | Chr5: 21756549-21756724 | Arabidopsis thaliana |
AT5G53550:CDS:4.3 | 98 | Chr5: 21756959-21757056 | Arabidopsis thaliana |
AT5G53550:CDS:5.3 | 135 | Chr5: 21757146-21757280 | Arabidopsis thaliana |
AT5G53550:CDS:6.3 | 190 | Chr5: 21757365-21757554 | Arabidopsis thaliana |
AT5G53550:CDS:7.3 | 118 | Chr5: 21757643-21757760 | Arabidopsis thaliana |
AT5G53550:CDS:8.3 | 938 | Chr5: 21757839-21758776 | Arabidopsis thaliana |
AT5G53550:CDS:1.3 | 373 | Chr5: 21756081-21756453 | Arabidopsis thaliana |
AT5G53550:CDS:2.3 | 176 | Chr5: 21756549-21756724 | Arabidopsis thaliana |
AT5G53550:CDS:4.4 | 98 | Chr5: 21756959-21757056 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53550:exon:1 | 308 | Chr5: 21755251-21755558 | Arabidopsis thaliana |
AT5G53550:exon:2 | 475 | Chr5: 21755251-21755725 | Arabidopsis thaliana |
AT5G53550:exon:17 | 1095 | Chr5: 21757839-21758933 | Arabidopsis thaliana |
AT5G53550:exon:3 | 270 | Chr5: 21755289-21755558 | Arabidopsis thaliana |
AT5G53550:exon:9 | 707 | Chr5: 21756018-21756724 | Arabidopsis thaliana |
AT5G53550:exon:5 | 613 | Chr5: 21755291-21755903 | Arabidopsis thaliana |
AT5G53550:exon:16 | 1094 | Chr5: 21757839-21758932 | Arabidopsis thaliana |
AT5G53550:exon:4 | 184 | Chr5: 21755291-21755474 | Arabidopsis thaliana |
AT5G53550:exon:6 | 80 | Chr5: 21755824-21755903 | Arabidopsis thaliana |
AT5G53550:exon:8 | 436 | Chr5: 21756018-21756453 | Arabidopsis thaliana |
AT5G53550:exon:18 | 1112 | Chr5: 21757839-21758950 | Arabidopsis thaliana |
AT5G53550:exon:7 | 461 | Chr5: 21755993-21756453 | Arabidopsis thaliana |
AT5G53550:exon:10 | 176 | Chr5: 21756549-21756724 | Arabidopsis thaliana |
AT5G53550:exon:11 | 98 | Chr5: 21756959-21757056 | Arabidopsis thaliana |
AT5G53550:exon:12 | 135 | Chr5: 21757146-21757280 | Arabidopsis thaliana |
AT5G53550:exon:13 | 190 | Chr5: 21757365-21757554 | Arabidopsis thaliana |
AT5G53550:exon:14 | 118 | Chr5: 21757643-21757760 | Arabidopsis thaliana |
AT5G53550:exon:15 | 1083 | Chr5: 21757839-21758921 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53550:five_prime_UTR:1 | 308 | Chr5: 21755251-21755558 | Arabidopsis thaliana |
AT5G53550:five_prime_UTR:2 | 475 | Chr5: 21755251-21755725 | Arabidopsis thaliana |
AT5G53550:five_prime_UTR:3 | 270 | Chr5: 21755289-21755558 | Arabidopsis thaliana |
AT5G53550:five_prime_UTR:9 | 644 | Chr5: 21756018-21756661 | Arabidopsis thaliana |
AT5G53550:five_prime_UTR:5 | 613 | Chr5: 21755291-21755903 | Arabidopsis thaliana |
AT5G53550:five_prime_UTR:4 | 184 | Chr5: 21755291-21755474 | Arabidopsis thaliana |
AT5G53550:five_prime_UTR:6 | 80 | Chr5: 21755824-21755903 | Arabidopsis thaliana |
AT5G53550:five_prime_UTR:8 | 63 | Chr5: 21756018-21756080 | Arabidopsis thaliana |
AT5G53550:five_prime_UTR:7 | 88 | Chr5: 21755993-21756080 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G53550.2 | 2636 | Chr5: 21755251-21758933 |
AT5G53550.3 | 2803 | Chr5: 21755251-21758933 |
AT5G53550.4 | 2710 | Chr5: 21755289-21758950 |
AT5G53550.5 | 2860 | Chr5: 21755291-21758932 |
AT5G53550.1 | 2529 | Chr5: 21755291-21758950 |
AT5G53550.6 | 2261 | Chr5: 21755993-21758921 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53550:three_prime_UTR:3 | 157 | Chr5: 21758777-21758933 | Arabidopsis thaliana |
AT5G53550:three_prime_UTR:2 | 156 | Chr5: 21758777-21758932 | Arabidopsis thaliana |
AT5G53550:three_prime_UTR:4 | 174 | Chr5: 21758777-21758950 | Arabidopsis thaliana |
AT5G53550:three_prime_UTR:1 | 145 | Chr5: 21758777-21758921 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
YSL3_ARATH | developmental stage | Highly expressed during leaf senescence. |
YSL3_ARATH | function | May be involved in the lateral transport of nicotianamine-chelated metals in the vasculature. |
A0A1P8BFW1_ARATH YSL3_ARATH | similarity | Belongs to the YSL (TC 2.A.67.2) family. |
YSL3_ARATH | tissue specificity | Expressed in leaves, anthers and pollen grains. Restricted to the vasculature. |
Function
Gene Ontology
cellular component | |
---|---|
plasma membrane | ECO |
molecular function | |
oligopeptide transmembrane transporter activity | ECO |
biological process | |
response to nematode | ECO |
iron ion transport | ECO |
developmental process involved in reproduction | ECO |
seed development | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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