External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53420:CDS:4 | 348 | Chr5: 21674700-21675047 | Arabidopsis thaliana |
AT5G53420:CDS:5 | 132 | Chr5: 21675176-21675307 | Arabidopsis thaliana |
AT5G53420:CDS:6 | 78 | Chr5: 21675392-21675469 | Arabidopsis thaliana |
AT5G53420:CDS:1 | 105 | Chr5: 21673683-21673787 | Arabidopsis thaliana |
AT5G53420:CDS:2 | 480 | Chr5: 21674568-21675047 | Arabidopsis thaliana |
AT5G53420:CDS:5.1 | 132 | Chr5: 21675176-21675307 | Arabidopsis thaliana |
AT5G53420:CDS:6.1 | 78 | Chr5: 21675392-21675469 | Arabidopsis thaliana |
AT5G53420:CDS:4.1 | 348 | Chr5: 21674700-21675047 | Arabidopsis thaliana |
AT5G53420:CDS:5.2 | 132 | Chr5: 21675176-21675307 | Arabidopsis thaliana |
AT5G53420:CDS:6.2 | 78 | Chr5: 21675392-21675469 | Arabidopsis thaliana |
AT5G53420:CDS:1.1 | 105 | Chr5: 21673683-21673787 | Arabidopsis thaliana |
AT5G53420:CDS:3 | 513 | Chr5: 21674568-21675080 | Arabidopsis thaliana |
AT5G53420:CDS:4.2 | 348 | Chr5: 21674700-21675047 | Arabidopsis thaliana |
AT5G53420:CDS:5.3 | 132 | Chr5: 21675176-21675307 | Arabidopsis thaliana |
AT5G53420:CDS:6.3 | 78 | Chr5: 21675392-21675469 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53420:exon:1 | 356 | Chr5: 21673432-21673787 | Arabidopsis thaliana |
AT5G53420:exon:5 | 983 | Chr5: 21674065-21675047 | Arabidopsis thaliana |
AT5G53420:exon:10 | 368 | Chr5: 21675392-21675759 | Arabidopsis thaliana |
AT5G53420:exon:2 | 330 | Chr5: 21673458-21673787 | Arabidopsis thaliana |
AT5G53420:exon:3 | 1590 | Chr5: 21673458-21675047 | Arabidopsis thaliana |
AT5G53420:exon:12 | 412 | Chr5: 21675392-21675803 | Arabidopsis thaliana |
AT5G53420:exon:4 | 263 | Chr5: 21673525-21673787 | Arabidopsis thaliana |
AT5G53420:exon:8 | 587 | Chr5: 21674568-21675154 | Arabidopsis thaliana |
AT5G53420:exon:6 | 322 | Chr5: 21674168-21674489 | Arabidopsis thaliana |
AT5G53420:exon:7 | 480 | Chr5: 21674568-21675047 | Arabidopsis thaliana |
AT5G53420:exon:9 | 132 | Chr5: 21675176-21675307 | Arabidopsis thaliana |
AT5G53420:exon:11 | 374 | Chr5: 21675392-21675765 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53420:five_prime_UTR:1 | 356 | Chr5: 21673432-21673787 | Arabidopsis thaliana |
AT5G53420:five_prime_UTR:5 | 635 | Chr5: 21674065-21674699 | Arabidopsis thaliana |
AT5G53420:five_prime_UTR:2 | 225 | Chr5: 21673458-21673682 | Arabidopsis thaliana |
AT5G53420:five_prime_UTR:3 | 1242 | Chr5: 21673458-21674699 | Arabidopsis thaliana |
AT5G53420:five_prime_UTR:4 | 158 | Chr5: 21673525-21673682 | Arabidopsis thaliana |
AT5G53420:five_prime_UTR:6 | 322 | Chr5: 21674168-21674489 | Arabidopsis thaliana |
AT5G53420:five_prime_UTR:7 | 132 | Chr5: 21674568-21674699 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G53420.4 | 1839 | Chr5: 21673432-21675759 |
AT5G53420.1 | 1354 | Chr5: 21673458-21675803 |
AT5G53420.5 | 2134 | Chr5: 21673458-21675803 |
AT5G53420.3 | 850 | Chr5: 21673525-21675154 |
AT5G53420.2 | 1308 | Chr5: 21674168-21675765 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53420:three_prime_UTR:2 | 290 | Chr5: 21675470-21675759 | Arabidopsis thaliana |
AT5G53420:three_prime_UTR:4 | 334 | Chr5: 21675470-21675803 | Arabidopsis thaliana |
AT5G53420:three_prime_UTR:1 | 74 | Chr5: 21675081-21675154 | Arabidopsis thaliana |
AT5G53420:three_prime_UTR:3 | 296 | Chr5: 21675470-21675765 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
No terms in this category. | |
biological process | |
regulation of flower development | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...