External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53220:CDS:1 | 911 | Chr5: 21596824-21597734 | Arabidopsis thaliana |
AT5G53220:CDS:2 | 196 | Chr5: 21597809-21598004 | Arabidopsis thaliana |
AT5G53220:CDS:1.1 | 911 | Chr5: 21596824-21597734 | Arabidopsis thaliana |
AT5G53220:CDS:2.1 | 196 | Chr5: 21597809-21598004 | Arabidopsis thaliana |
AT5G53220:CDS:1.2 | 911 | Chr5: 21596824-21597734 | Arabidopsis thaliana |
AT5G53220:CDS:2.2 | 196 | Chr5: 21597809-21598004 | Arabidopsis thaliana |
AT5G53220:CDS:1.3 | 911 | Chr5: 21596824-21597734 | Arabidopsis thaliana |
AT5G53220:CDS:2.3 | 196 | Chr5: 21597809-21598004 | Arabidopsis thaliana |
AT5G53220:CDS:1.4 | 911 | Chr5: 21596824-21597734 | Arabidopsis thaliana |
AT5G53220:CDS:2.4 | 196 | Chr5: 21597809-21598004 | Arabidopsis thaliana |
AT5G53220:CDS:1.5 | 911 | Chr5: 21596824-21597734 | Arabidopsis thaliana |
AT5G53220:CDS:2.5 | 196 | Chr5: 21597809-21598004 | Arabidopsis thaliana |
AT5G53220:CDS:1.6 | 911 | Chr5: 21596824-21597734 | Arabidopsis thaliana |
AT5G53220:CDS:2.6 | 196 | Chr5: 21597809-21598004 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53220:exon:1 | 722 | Chr5: 21595990-21596711 | Arabidopsis thaliana |
AT5G53220:exon:7 | 237 | Chr5: 21596475-21596711 | Arabidopsis thaliana |
AT5G53220:exon:4 | 476 | Chr5: 21596236-21596711 | Arabidopsis thaliana |
AT5G53220:exon:6 | 1479 | Chr5: 21596256-21597734 | Arabidopsis thaliana |
AT5G53220:exon:9 | 416 | Chr5: 21597809-21598224 | Arabidopsis thaliana |
AT5G53220:exon:5 | 456 | Chr5: 21596256-21596711 | Arabidopsis thaliana |
AT5G53220:exon:3 | 1741 | Chr5: 21595994-21597734 | Arabidopsis thaliana |
AT5G53220:exon:2 | 161 | Chr5: 21595994-21596154 | Arabidopsis thaliana |
AT5G53220:exon:8 | 922 | Chr5: 21596813-21597734 | Arabidopsis thaliana |
AT5G53220:exon:10 | 508 | Chr5: 21597809-21598316 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53220:five_prime_UTR:1 | 722 | Chr5: 21595990-21596711 | Arabidopsis thaliana |
AT5G53220:five_prime_UTR:7 | 237 | Chr5: 21596475-21596711 | Arabidopsis thaliana |
AT5G53220:five_prime_UTR:4 | 476 | Chr5: 21596236-21596711 | Arabidopsis thaliana |
AT5G53220:five_prime_UTR:6 | 568 | Chr5: 21596256-21596823 | Arabidopsis thaliana |
AT5G53220:five_prime_UTR:5 | 456 | Chr5: 21596256-21596711 | Arabidopsis thaliana |
AT5G53220:five_prime_UTR:3 | 830 | Chr5: 21595994-21596823 | Arabidopsis thaliana |
AT5G53220:five_prime_UTR:2 | 161 | Chr5: 21595994-21596154 | Arabidopsis thaliana |
AT5G53220:five_prime_UTR:8 | 11 | Chr5: 21596813-21596823 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G53220.2 | 2152 | Chr5: 21595990-21598316 |
AT5G53220.7 | 1736 | Chr5: 21595994-21598224 |
AT5G53220.1 | 1975 | Chr5: 21595994-21598224 |
AT5G53220.5 | 2056 | Chr5: 21595994-21598224 |
AT5G53220.6 | 2047 | Chr5: 21595994-21598316 |
AT5G53220.4 | 2249 | Chr5: 21595994-21598316 |
AT5G53220.3 | 1591 | Chr5: 21595994-21598316 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53220:three_prime_UTR:1 | 220 | Chr5: 21598005-21598224 | Arabidopsis thaliana |
AT5G53220:three_prime_UTR:2 | 312 | Chr5: 21598005-21598316 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...