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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53180:CDS:16 | 416 | Chr5: 21568393-21568808 | Arabidopsis thaliana |
AT5G53180:CDS:15 | 82 | Chr5: 21568898-21568979 | Arabidopsis thaliana |
AT5G53180:CDS:14 | 105 | Chr5: 21569065-21569169 | Arabidopsis thaliana |
AT5G53180:CDS:13 | 58 | Chr5: 21569351-21569408 | Arabidopsis thaliana |
AT5G53180:CDS:12 | 96 | Chr5: 21569516-21569611 | Arabidopsis thaliana |
AT5G53180:CDS:10 | 74 | Chr5: 21569999-21570072 | Arabidopsis thaliana |
AT5G53180:CDS:8 | 63 | Chr5: 21570166-21570228 | Arabidopsis thaliana |
AT5G53180:CDS:5 | 58 | Chr5: 21570834-21570891 | Arabidopsis thaliana |
AT5G53180:CDS:3 | 38 | Chr5: 21571044-21571081 | Arabidopsis thaliana |
AT5G53180:CDS:16.1 | 416 | Chr5: 21568393-21568808 | Arabidopsis thaliana |
AT5G53180:CDS:15.1 | 82 | Chr5: 21568898-21568979 | Arabidopsis thaliana |
AT5G53180:CDS:14.1 | 105 | Chr5: 21569065-21569169 | Arabidopsis thaliana |
AT5G53180:CDS:13.1 | 58 | Chr5: 21569351-21569408 | Arabidopsis thaliana |
AT5G53180:CDS:12.1 | 96 | Chr5: 21569516-21569611 | Arabidopsis thaliana |
AT5G53180:CDS:10.1 | 74 | Chr5: 21569999-21570072 | Arabidopsis thaliana |
AT5G53180:CDS:8.1 | 63 | Chr5: 21570166-21570228 | Arabidopsis thaliana |
AT5G53180:CDS:2 | 210 | Chr5: 21571044-21571253 | Arabidopsis thaliana |
AT5G53180:CDS:1 | 186 | Chr5: 21571352-21571537 | Arabidopsis thaliana |
AT5G53180:CDS:16.2 | 416 | Chr5: 21568393-21568808 | Arabidopsis thaliana |
AT5G53180:CDS:15.2 | 82 | Chr5: 21568898-21568979 | Arabidopsis thaliana |
AT5G53180:CDS:14.2 | 105 | Chr5: 21569065-21569169 | Arabidopsis thaliana |
AT5G53180:CDS:13.2 | 58 | Chr5: 21569351-21569408 | Arabidopsis thaliana |
AT5G53180:CDS:12.2 | 96 | Chr5: 21569516-21569611 | Arabidopsis thaliana |
AT5G53180:CDS:10.2 | 74 | Chr5: 21569999-21570072 | Arabidopsis thaliana |
AT5G53180:CDS:8.2 | 63 | Chr5: 21570166-21570228 | Arabidopsis thaliana |
AT5G53180:CDS:6 | 54 | Chr5: 21570834-21570887 | Arabidopsis thaliana |
AT5G53180:CDS:16.3 | 416 | Chr5: 21568393-21568808 | Arabidopsis thaliana |
AT5G53180:CDS:15.3 | 82 | Chr5: 21568898-21568979 | Arabidopsis thaliana |
AT5G53180:CDS:14.3 | 105 | Chr5: 21569065-21569169 | Arabidopsis thaliana |
AT5G53180:CDS:13.3 | 58 | Chr5: 21569351-21569408 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53180:exon:21 | 678 | Chr5: 21568131-21568808 | Arabidopsis thaliana |
AT5G53180:exon:8 | 58 | Chr5: 21570834-21570891 | Arabidopsis thaliana |
AT5G53180:exon:20 | 676 | Chr5: 21568133-21568808 | Arabidopsis thaliana |
AT5G53180:exon:6 | 420 | Chr5: 21570834-21571253 | Arabidopsis thaliana |
AT5G53180:exon:2 | 116 | Chr5: 21571787-21571902 | Arabidopsis thaliana |
AT5G53180:exon:19 | 667 | Chr5: 21568142-21568808 | Arabidopsis thaliana |
AT5G53180:exon:7 | 61 | Chr5: 21570834-21570894 | Arabidopsis thaliana |
AT5G53180:exon:1 | 118 | Chr5: 21571787-21571904 | Arabidopsis thaliana |
AT5G53180:exon:18 | 609 | Chr5: 21568200-21568808 | Arabidopsis thaliana |
AT5G53180:exon:12 | 102 | Chr5: 21569971-21570072 | Arabidopsis thaliana |
AT5G53180:exon:10 | 63 | Chr5: 21570166-21570228 | Arabidopsis thaliana |
AT5G53180:exon:5 | 210 | Chr5: 21571044-21571253 | Arabidopsis thaliana |
AT5G53180:exon:4 | 207 | Chr5: 21571352-21571558 | Arabidopsis thaliana |
AT5G53180:exon:3 | 108 | Chr5: 21571787-21571894 | Arabidopsis thaliana |
AT5G53180:exon:17 | 600 | Chr5: 21568209-21568808 | Arabidopsis thaliana |
AT5G53180:exon:16 | 82 | Chr5: 21568898-21568979 | Arabidopsis thaliana |
AT5G53180:exon:15 | 105 | Chr5: 21569065-21569169 | Arabidopsis thaliana |
AT5G53180:exon:14 | 58 | Chr5: 21569351-21569408 | Arabidopsis thaliana |
AT5G53180:exon:13 | 96 | Chr5: 21569516-21569611 | Arabidopsis thaliana |
AT5G53180:exon:11 | 74 | Chr5: 21569999-21570072 | Arabidopsis thaliana |
AT5G53180:exon:9 | 509 | Chr5: 21570166-21570674 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53180:five_prime_UTR:4 | 21 | Chr5: 21571538-21571558 | Arabidopsis thaliana |
AT5G53180:five_prime_UTR:7 | 366 | Chr5: 21570888-21571253 | Arabidopsis thaliana |
AT5G53180:five_prime_UTR:2 | 116 | Chr5: 21571787-21571902 | Arabidopsis thaliana |
AT5G53180:five_prime_UTR:1 | 118 | Chr5: 21571787-21571904 | Arabidopsis thaliana |
AT5G53180:five_prime_UTR:6 | 172 | Chr5: 21571082-21571253 | Arabidopsis thaliana |
AT5G53180:five_prime_UTR:5 | 207 | Chr5: 21571352-21571558 | Arabidopsis thaliana |
AT5G53180:five_prime_UTR:3 | 108 | Chr5: 21571787-21571894 | Arabidopsis thaliana |
AT5G53180:five_prime_UTR:8 | 440 | Chr5: 21570235-21570674 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G53180.2 | 1747 | Chr5: 21568131-21571902 |
AT5G53180.1 | 1687 | Chr5: 21568133-21571902 |
AT5G53180.3 | 1897 | Chr5: 21568133-21571902 |
AT5G53180.4 | 1741 | Chr5: 21568142-21571904 |
AT5G53180.5 | 1640 | Chr5: 21568200-21571894 |
AT5G53180.6 | 1524 | Chr5: 21568209-21570674 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53180:three_prime_UTR:5 | 262 | Chr5: 21568131-21568392 | Arabidopsis thaliana |
AT5G53180:three_prime_UTR:4 | 260 | Chr5: 21568133-21568392 | Arabidopsis thaliana |
AT5G53180:three_prime_UTR:3 | 251 | Chr5: 21568142-21568392 | Arabidopsis thaliana |
AT5G53180:three_prime_UTR:2 | 193 | Chr5: 21568200-21568392 | Arabidopsis thaliana |
AT5G53180:three_prime_UTR:1 | 184 | Chr5: 21568209-21568392 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
PTBP2_ARATH | function | Plays a role in pre-mRNA splicing. Binds to the polypyrimidine tract of introns. May promote the binding of U2 snRNP to pre-mRNA (By similarity). |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
P-body | ECO |
cytoplasm | ECO |
molecular function | |
mRNA binding | ECO |
RNA binding | ECO |
biological process | |
RNA splicing | ECO |
mRNA processing | ECO |
regulation of alternative mRNA splicing, via spliceosome | ECO |
regulation of RNA splicing | ECO |
seed germination | ECO |
regulation of translation | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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