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Gene : PTB2 A. thaliana

DB identifier  ? AT5G53180 Secondary Identifier  ? locus:2163746
Name  ? polypyrimidine tract-binding protein 2 Brief Description  polypyrimidine tract-binding protein 2
TAIR Computational Description  polypyrimidine tract-binding protein 2;(source:Araport11)
TAIR Curator Summary  Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.
TAIR Short Description  polypyrimidine tract-binding protein 2
TAIR Aliases  ATPTB2, PTB2

3 Gene Rifs

1 Organism

17 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3774  
Location: Chr5:21568131-21571904 reverse strand

Gene models - PTB2 AT5G53180

? Gene models

Transcripts: 6  Exons: 59  Introns: 53 

Overlapping Features

? Genome features that overlap coordinates of this Gene

27 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PTBP2_ARATH function Plays a role in pre-mRNA splicing. Binds to the polypyrimidine tract of introns. May promote the binding of U2 snRNP to pre-mRNA (By similarity).

6 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
P-body  ? ECO  
cytoplasm  ? ECO  
molecular function
mRNA binding  ? ECO  
RNA binding  ? ECO  
biological process
RNA splicing  ? ECO  
mRNA processing  ? ECO  
regulation of alternative mRNA splicing, via spliceosome  ? ECO  
regulation of RNA splicing  ? ECO  
seed germination  ? ECO  
regulation of translation  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets