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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 9, Exons: 12, Five Prime UTRs: 6, mRNAs: 6, Three Prime UTRs: 5, Transposable Element: 1, Transposon Fragments: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53150:CDS:3 | 2268 | Chr5: 21554935-21557202 | Arabidopsis thaliana |
AT5G53150:CDS:3.1 | 2268 | Chr5: 21554935-21557202 | Arabidopsis thaliana |
AT5G53150:CDS:1 | 1072 | Chr5: 21554935-21556006 | Arabidopsis thaliana |
AT5G53150:CDS:4 | 1109 | Chr5: 21556094-21557202 | Arabidopsis thaliana |
AT5G53150:CDS:2 | 1560 | Chr5: 21554935-21556494 | Arabidopsis thaliana |
AT5G53150:CDS:5 | 90 | Chr5: 21556662-21556751 | Arabidopsis thaliana |
AT5G53150:CDS:3.2 | 2268 | Chr5: 21554935-21557202 | Arabidopsis thaliana |
AT5G53150:CDS:1.1 | 1072 | Chr5: 21554935-21556006 | Arabidopsis thaliana |
AT5G53150:CDS:4.1 | 1109 | Chr5: 21556094-21557202 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53150:exon:1 | 134 | Chr5: 21553355-21553488 | Arabidopsis thaliana |
AT5G53150:exon:9 | 2749 | Chr5: 21554844-21557592 | Arabidopsis thaliana |
AT5G53150:exon:2 | 1229 | Chr5: 21553484-21554712 | Arabidopsis thaliana |
AT5G53150:exon:3 | 1228 | Chr5: 21553485-21554712 | Arabidopsis thaliana |
AT5G53150:exon:7 | 1163 | Chr5: 21554844-21556006 | Arabidopsis thaliana |
AT5G53150:exon:10 | 1398 | Chr5: 21556094-21557491 | Arabidopsis thaliana |
AT5G53150:exon:6 | 2624 | Chr5: 21553871-21556494 | Arabidopsis thaliana |
AT5G53150:exon:12 | 864 | Chr5: 21556662-21557525 | Arabidopsis thaliana |
AT5G53150:exon:4 | 569 | Chr5: 21553871-21554439 | Arabidopsis thaliana |
AT5G53150:exon:8 | 2696 | Chr5: 21554844-21557539 | Arabidopsis thaliana |
AT5G53150:exon:5 | 2136 | Chr5: 21553871-21556006 | Arabidopsis thaliana |
AT5G53150:exon:11 | 1447 | Chr5: 21556094-21557540 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53150:five_prime_UTR:1 | 134 | Chr5: 21553355-21553488 | Arabidopsis thaliana |
AT5G53150:five_prime_UTR:2 | 1229 | Chr5: 21553484-21554712 | Arabidopsis thaliana |
AT5G53150:five_prime_UTR:3 | 1228 | Chr5: 21553485-21554712 | Arabidopsis thaliana |
AT5G53150:five_prime_UTR:4 | 569 | Chr5: 21553871-21554439 | Arabidopsis thaliana |
AT5G53150:five_prime_UTR:6 | 91 | Chr5: 21554844-21554934 | Arabidopsis thaliana |
AT5G53150:five_prime_UTR:5 | 1064 | Chr5: 21553871-21554934 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G53150.2 | 2883 | Chr5: 21553355-21557592 |
AT5G53150.3 | 3925 | Chr5: 21553484-21557539 |
AT5G53150.1 | 3789 | Chr5: 21553485-21557491 |
AT5G53150.5 | 3488 | Chr5: 21553871-21557525 |
AT5G53150.6 | 3265 | Chr5: 21553871-21557539 |
AT5G53150.4 | 3583 | Chr5: 21553871-21557540 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53150:three_prime_UTR:5 | 390 | Chr5: 21557203-21557592 | Arabidopsis thaliana |
AT5G53150:three_prime_UTR:2 | 289 | Chr5: 21557203-21557491 | Arabidopsis thaliana |
AT5G53150:three_prime_UTR:1 | 774 | Chr5: 21556752-21557525 | Arabidopsis thaliana |
AT5G53150:three_prime_UTR:3 | 337 | Chr5: 21557203-21557539 | Arabidopsis thaliana |
AT5G53150:three_prime_UTR:4 | 338 | Chr5: 21557203-21557540 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE77640 | 237 | Chr5: 21556084-21556320 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE77640:transposon_fragment:2 | 59 | Chr5: 21556084-21556142 | Arabidopsis thaliana |
AT5TE77640:transposon_fragment:1 | 85 | Chr5: 21556236-21556320 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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