External Links
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- Plant Proteome Database
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- ABRC
- TAIR
- EnsemblPlants
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- ATTED-II
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNAs: 4, CDSs: 53, Exons: 31, Five Prime UTRs: 4, Gene: 1, mRNAs: 6, Three Prime UTRs: 6
Antisense lncRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G53048.1 | 936 | Chr5: 21509861-21511850 |
AT5G53048.2 | 482 | Chr5: 21510686-21511320 |
AT5G53048.3 | 348 | Chr5: 21510740-21511447 |
AT5G53048.4 | 270 | Chr5: 21510905-21511447 |
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53050:CDS:15 | 197 | Chr5: 21510534-21510730 | Arabidopsis thaliana |
AT5G53050:CDS:14 | 88 | Chr5: 21510838-21510925 | Arabidopsis thaliana |
AT5G53050:CDS:9 | 118 | Chr5: 21511426-21511543 | Arabidopsis thaliana |
AT5G53050:CDS:7 | 149 | Chr5: 21511670-21511818 | Arabidopsis thaliana |
AT5G53050:CDS:6 | 54 | Chr5: 21511913-21511966 | Arabidopsis thaliana |
AT5G53050:CDS:5 | 96 | Chr5: 21512348-21512443 | Arabidopsis thaliana |
AT5G53050:CDS:4 | 101 | Chr5: 21512644-21512744 | Arabidopsis thaliana |
AT5G53050:CDS:3 | 83 | Chr5: 21512828-21512910 | Arabidopsis thaliana |
AT5G53050:CDS:2 | 184 | Chr5: 21513039-21513222 | Arabidopsis thaliana |
AT5G53050:CDS:1 | 121 | Chr5: 21513312-21513432 | Arabidopsis thaliana |
AT5G53050:CDS:15.1 | 197 | Chr5: 21510534-21510730 | Arabidopsis thaliana |
AT5G53050:CDS:14.1 | 88 | Chr5: 21510838-21510925 | Arabidopsis thaliana |
AT5G53050:CDS:9.1 | 118 | Chr5: 21511426-21511543 | Arabidopsis thaliana |
AT5G53050:CDS:7.1 | 149 | Chr5: 21511670-21511818 | Arabidopsis thaliana |
AT5G53050:CDS:6.1 | 54 | Chr5: 21511913-21511966 | Arabidopsis thaliana |
AT5G53050:CDS:5.1 | 96 | Chr5: 21512348-21512443 | Arabidopsis thaliana |
AT5G53050:CDS:4.1 | 101 | Chr5: 21512644-21512744 | Arabidopsis thaliana |
AT5G53050:CDS:3.1 | 83 | Chr5: 21512828-21512910 | Arabidopsis thaliana |
AT5G53050:CDS:2.1 | 184 | Chr5: 21513039-21513222 | Arabidopsis thaliana |
AT5G53050:CDS:1.1 | 121 | Chr5: 21513312-21513432 | Arabidopsis thaliana |
AT5G53050:CDS:13 | 25 | Chr5: 21510901-21510925 | Arabidopsis thaliana |
AT5G53050:CDS:10 | 126 | Chr5: 21511418-21511543 | Arabidopsis thaliana |
AT5G53050:CDS:7.2 | 149 | Chr5: 21511670-21511818 | Arabidopsis thaliana |
AT5G53050:CDS:6.2 | 54 | Chr5: 21511913-21511966 | Arabidopsis thaliana |
AT5G53050:CDS:5.2 | 96 | Chr5: 21512348-21512443 | Arabidopsis thaliana |
AT5G53050:CDS:4.2 | 101 | Chr5: 21512644-21512744 | Arabidopsis thaliana |
AT5G53050:CDS:3.2 | 83 | Chr5: 21512828-21512910 | Arabidopsis thaliana |
AT5G53050:CDS:2.2 | 184 | Chr5: 21513039-21513222 | Arabidopsis thaliana |
AT5G53050:CDS:1.2 | 121 | Chr5: 21513312-21513432 | Arabidopsis thaliana |
AT5G53050:CDS:15.2 | 197 | Chr5: 21510534-21510730 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53048:exon:2 | 161 | Chr5: 21510548-21510708 | Arabidopsis thaliana |
AT5G53048:exon:9 | 99 | Chr5: 21510947-21511045 | Arabidopsis thaliana |
AT5G53048:exon:11 | 532 | Chr5: 21511319-21511850 | Arabidopsis thaliana |
AT5G53048:exon:3 | 23 | Chr5: 21510686-21510708 | Arabidopsis thaliana |
AT5G53048:exon:5 | 82 | Chr5: 21510775-21510856 | Arabidopsis thaliana |
AT5G53048:exon:8 | 377 | Chr5: 21510944-21511320 | Arabidopsis thaliana |
AT5G53048:exon:4 | 117 | Chr5: 21510740-21510856 | Arabidopsis thaliana |
AT5G53048:exon:7 | 102 | Chr5: 21510944-21511045 | Arabidopsis thaliana |
AT5G53048:exon:6 | 141 | Chr5: 21510905-21511045 | Arabidopsis thaliana |
AT5G53048:exon:10 | 129 | Chr5: 21511319-21511447 | Arabidopsis thaliana |
AT5G53050:exon:21 | 636 | Chr5: 21510095-21510730 | Arabidopsis thaliana |
AT5G53050:exon:20 | 293 | Chr5: 21510129-21510421 | Arabidopsis thaliana |
AT5G53050:exon:12 | 118 | Chr5: 21511426-21511543 | Arabidopsis thaliana |
AT5G53050:exon:2 | 295 | Chr5: 21513312-21513606 | Arabidopsis thaliana |
AT5G53050:exon:19 | 259 | Chr5: 21510163-21510421 | Arabidopsis thaliana |
AT5G53050:exon:18 | 230 | Chr5: 21510501-21510730 | Arabidopsis thaliana |
AT5G53050:exon:13 | 126 | Chr5: 21511418-21511543 | Arabidopsis thaliana |
AT5G53050:exon:4 | 196 | Chr5: 21513312-21513507 | Arabidopsis thaliana |
AT5G53050:exon:17 | 197 | Chr5: 21510534-21510730 | Arabidopsis thaliana |
AT5G53050:exon:16 | 88 | Chr5: 21510838-21510925 | Arabidopsis thaliana |
AT5G53050:exon:11 | 393 | Chr5: 21511426-21511818 | Arabidopsis thaliana |
AT5G53050:exon:3 | 265 | Chr5: 21513312-21513576 | Arabidopsis thaliana |
AT5G53050:exon:14 | 423 | Chr5: 21511396-21511818 | Arabidopsis thaliana |
AT5G53050:exon:15 | 148 | Chr5: 21511396-21511543 | Arabidopsis thaliana |
AT5G53050:exon:10 | 149 | Chr5: 21511670-21511818 | Arabidopsis thaliana |
AT5G53050:exon:9 | 54 | Chr5: 21511913-21511966 | Arabidopsis thaliana |
AT5G53050:exon:8 | 96 | Chr5: 21512348-21512443 | Arabidopsis thaliana |
AT5G53050:exon:7 | 101 | Chr5: 21512644-21512744 | Arabidopsis thaliana |
AT5G53050:exon:6 | 83 | Chr5: 21512828-21512910 | Arabidopsis thaliana |
AT5G53050:exon:5 | 184 | Chr5: 21513039-21513222 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53050:five_prime_UTR:2 | 174 | Chr5: 21513433-21513606 | Arabidopsis thaliana |
AT5G53050:five_prime_UTR:4 | 75 | Chr5: 21513433-21513507 | Arabidopsis thaliana |
AT5G53050:five_prime_UTR:3 | 144 | Chr5: 21513433-21513576 | Arabidopsis thaliana |
AT5G53050:five_prime_UTR:1 | 188 | Chr5: 21513433-21513620 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G53048 | locus:4515103722 | AT5G53048 | 1990 | Chr5: 21509861-21511850 | A. thaliana | Natural antisense transcript overlaps with AT5G53050;(source:Araport11) | NULL | other RNA |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G53050.3 | 1804 | Chr5: 21510095-21513606 |
AT5G53050.2 | 1691 | Chr5: 21510129-21513606 |
AT5G53050.1 | 1566 | Chr5: 21510163-21513507 |
AT5G53050.4 | 1461 | Chr5: 21510534-21513576 |
AT5G53050.5 | 1250 | Chr5: 21511396-21513620 |
AT5G53050.6 | 1124 | Chr5: 21511396-21513620 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53050:three_prime_UTR:6 | 439 | Chr5: 21510095-21510533 | Arabidopsis thaliana |
AT5G53050:three_prime_UTR:5 | 293 | Chr5: 21510129-21510421 | Arabidopsis thaliana |
AT5G53050:three_prime_UTR:3 | 33 | Chr5: 21510501-21510533 | Arabidopsis thaliana |
AT5G53050:three_prime_UTR:4 | 259 | Chr5: 21510163-21510421 | Arabidopsis thaliana |
AT5G53050:three_prime_UTR:2 | 230 | Chr5: 21510501-21510730 | Arabidopsis thaliana |
AT5G53050:three_prime_UTR:1 | 63 | Chr5: 21510838-21510900 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...