help  | faq  | software  | BAR
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : AT5G52810 A. thaliana

DB identifier  ? AT5G52810 Secondary Identifier  ? locus:2176882
Brief Description  NAD(P)-binding Rossmann-fold superfamily protein
TAIR Computational Description  NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
TAIR Curator Summary  SAR-DEFICIENT4 (SARD4) alias ORNITHINE CYCLODEAMINASE/m-CRYSTALLIN (ORNCD1) is involved in the biosynthesis of pipecolic acid. The reductase converts dehydropipecolic acid intermediates generated from L-Lysine by AGD2-LIKE DEFENSE RESPONSE PROTEIN1 (ALD1) to pipecolic acid (PMID:28330936).
TAIR Short Description  NAD(P)-binding Rossmann-fold superfamily protein
TAIR Aliases  SARD4

1 Gene Rifs

1 Organism

11 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1356  
Location: Chr5:21399331-21400686

Gene models - AT5G52810 AT5G52810

? Gene models

Transcripts: 1  Exons: 1 

Overlapping Features

? Genome features that overlap coordinates of this Gene

2 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

0 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
SARD4_ARATH function Involved in the biosynthesis of pipecolate (Pip), a metabolite that orchestrates defense amplification, positive regulation of salicylic acid (SA) biosynthesis, and priming to guarantee effective local resistance induction and the establishment of systemic acquired resistance (SAR). Converts delta-(1)-piperideine-2-carboxylate (P2C) to Pip. Mediates reduction of P2C and biosynthesis of Pip in systemic tissue and contributes to SAR establishment (PubMed:27758894). Does not possess ornithine cyclodeaminase activity in vitro (PubMed:24237637).
SARD4_ARATH similarity Belongs to the ornithine cyclodeaminase/mu-crystallin family.

1 Proteins

Function

Gene Ontology

cellular component
plastid  ? ECO  
cytoplasm  ? ECO  
chloroplast  ? ECO  
molecular function
dehydropipecolic acid reductase  ? ECO  
biological process
positive regulation of systemic acquired resistance  ? ECO  
systemic acquired resistance  ? ECO  
L-pipecolic acid biosynthetic process  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets