External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G52800:CDS:1 | 82 | Chr5: 21396053-21396134 | Arabidopsis thaliana |
AT5G52800:CDS:2 | 161 | Chr5: 21396341-21396501 | Arabidopsis thaliana |
AT5G52800:CDS:3 | 161 | Chr5: 21396592-21396752 | Arabidopsis thaliana |
AT5G52800:CDS:4 | 147 | Chr5: 21396835-21396981 | Arabidopsis thaliana |
AT5G52800:CDS:5 | 52 | Chr5: 21397070-21397121 | Arabidopsis thaliana |
AT5G52800:CDS:6 | 175 | Chr5: 21397246-21397420 | Arabidopsis thaliana |
AT5G52800:CDS:7 | 83 | Chr5: 21397665-21397747 | Arabidopsis thaliana |
AT5G52800:CDS:8 | 207 | Chr5: 21397819-21398025 | Arabidopsis thaliana |
AT5G52800:CDS:9 | 117 | Chr5: 21398149-21398265 | Arabidopsis thaliana |
AT5G52800:CDS:11 | 168 | Chr5: 21398392-21398559 | Arabidopsis thaliana |
AT5G52800:CDS:1.1 | 82 | Chr5: 21396053-21396134 | Arabidopsis thaliana |
AT5G52800:CDS:2.1 | 161 | Chr5: 21396341-21396501 | Arabidopsis thaliana |
AT5G52800:CDS:3.1 | 161 | Chr5: 21396592-21396752 | Arabidopsis thaliana |
AT5G52800:CDS:4.1 | 147 | Chr5: 21396835-21396981 | Arabidopsis thaliana |
AT5G52800:CDS:5.1 | 52 | Chr5: 21397070-21397121 | Arabidopsis thaliana |
AT5G52800:CDS:6.1 | 175 | Chr5: 21397246-21397420 | Arabidopsis thaliana |
AT5G52800:CDS:7.1 | 83 | Chr5: 21397665-21397747 | Arabidopsis thaliana |
AT5G52800:CDS:8.1 | 207 | Chr5: 21397819-21398025 | Arabidopsis thaliana |
AT5G52800:CDS:9.1 | 117 | Chr5: 21398149-21398265 | Arabidopsis thaliana |
AT5G52800:CDS:10 | 157 | Chr5: 21398392-21398548 | Arabidopsis thaliana |
AT5G52800:CDS:13 | 179 | Chr5: 21398635-21398813 | Arabidopsis thaliana |
AT5G52800:CDS:1.2 | 82 | Chr5: 21396053-21396134 | Arabidopsis thaliana |
AT5G52800:CDS:2.2 | 161 | Chr5: 21396341-21396501 | Arabidopsis thaliana |
AT5G52800:CDS:3.2 | 161 | Chr5: 21396592-21396752 | Arabidopsis thaliana |
AT5G52800:CDS:4.2 | 147 | Chr5: 21396835-21396981 | Arabidopsis thaliana |
AT5G52800:CDS:5.2 | 52 | Chr5: 21397070-21397121 | Arabidopsis thaliana |
AT5G52800:CDS:6.2 | 175 | Chr5: 21397246-21397420 | Arabidopsis thaliana |
AT5G52800:CDS:7.2 | 83 | Chr5: 21397665-21397747 | Arabidopsis thaliana |
AT5G52800:CDS:8.2 | 207 | Chr5: 21397819-21398025 | Arabidopsis thaliana |
AT5G52800:CDS:9.2 | 117 | Chr5: 21398149-21398265 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G52800:exon:11 | 245 | Chr5: 21398392-21398636 | Arabidopsis thaliana |
AT5G52800:exon:13 | 246 | Chr5: 21398635-21398880 | Arabidopsis thaliana |
AT5G52800:exon:1 | 191 | Chr5: 21395944-21396134 | Arabidopsis thaliana |
AT5G52800:exon:2 | 161 | Chr5: 21396341-21396501 | Arabidopsis thaliana |
AT5G52800:exon:3 | 161 | Chr5: 21396592-21396752 | Arabidopsis thaliana |
AT5G52800:exon:4 | 147 | Chr5: 21396835-21396981 | Arabidopsis thaliana |
AT5G52800:exon:5 | 52 | Chr5: 21397070-21397121 | Arabidopsis thaliana |
AT5G52800:exon:6 | 175 | Chr5: 21397246-21397420 | Arabidopsis thaliana |
AT5G52800:exon:7 | 83 | Chr5: 21397665-21397747 | Arabidopsis thaliana |
AT5G52800:exon:8 | 207 | Chr5: 21397819-21398025 | Arabidopsis thaliana |
AT5G52800:exon:9 | 117 | Chr5: 21398149-21398265 | Arabidopsis thaliana |
AT5G52800:exon:10 | 157 | Chr5: 21398392-21398548 | Arabidopsis thaliana |
AT5G52800:exon:12 | 108 | Chr5: 21398635-21398742 | Arabidopsis thaliana |
AT5G52800:exon:14 | 66 | Chr5: 21398861-21398926 | Arabidopsis thaliana |
AT5G52800:exon:15 | 233 | Chr5: 21399011-21399243 | Arabidopsis thaliana |
AT5G52800:exon:16 | 96 | Chr5: 21399324-21399419 | Arabidopsis thaliana |
AT5G52810:exon:1 | 1356 | Chr5: 21399331-21400686 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G52800:five_prime_UTR:1 | 109 | Chr5: 21395944-21396052 | Arabidopsis thaliana |
AT5G52810:five_prime_UTR:1 | 193 | Chr5: 21399331-21399523 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G52810 | locus:2176882 | AT5G52810 | 1356 | Chr5: 21399331-21400686 | A. thaliana | NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11) | SAR-DEFICIENT4 (SARD4) alias ORNITHINE CYCLODEAMINASE/m-CRYSTALLIN (ORNCD1) is involved in the biosynthesis of pipecolic acid. The reductase converts dehydropipecolic acid intermediates generated from L-Lysine by AGD2-LIKE DEFENSE RESPONSE PROTEIN1 (ALD1) to pipecolic acid (PMID:28330936). | NAD(P)-binding Rossmann-fold superfamily protein | SARD4 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G52800.2 | 1539 | Chr5: 21395944-21398636 |
AT5G52800.1 | 1697 | Chr5: 21395944-21398880 |
AT5G52800.3 | 1954 | Chr5: 21395944-21399419 |
AT5G52810.1 | 1356 | Chr5: 21399331-21400686 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G52800:three_prime_UTR:1 | 77 | Chr5: 21398560-21398636 | Arabidopsis thaliana |
AT5G52800:three_prime_UTR:2 | 67 | Chr5: 21398814-21398880 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
DNA-directed DNA polymerase activity | ECO |
DNA primase activity | ECO |
biological process | |
error-prone translesion synthesis | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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