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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 18, Exons: 11, Five Prime UTRs: 4, mRNAs: 3, Three Prime UTRs: 3, Transposable Elements: 2, Transposon Fragments: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G52230:CDS:6 | 1586 | Chr5: 21208097-21209682 | Arabidopsis thaliana |
AT5G52230:CDS:5 | 201 | Chr5: 21209782-21209982 | Arabidopsis thaliana |
AT5G52230:CDS:4 | 124 | Chr5: 21210090-21210213 | Arabidopsis thaliana |
AT5G52230:CDS:3 | 147 | Chr5: 21210327-21210473 | Arabidopsis thaliana |
AT5G52230:CDS:2 | 99 | Chr5: 21210609-21210707 | Arabidopsis thaliana |
AT5G52230:CDS:1 | 84 | Chr5: 21211551-21211634 | Arabidopsis thaliana |
AT5G52230:CDS:6.1 | 1586 | Chr5: 21208097-21209682 | Arabidopsis thaliana |
AT5G52230:CDS:5.1 | 201 | Chr5: 21209782-21209982 | Arabidopsis thaliana |
AT5G52230:CDS:4.1 | 124 | Chr5: 21210090-21210213 | Arabidopsis thaliana |
AT5G52230:CDS:3.1 | 147 | Chr5: 21210327-21210473 | Arabidopsis thaliana |
AT5G52230:CDS:2.1 | 99 | Chr5: 21210609-21210707 | Arabidopsis thaliana |
AT5G52230:CDS:1.1 | 84 | Chr5: 21211551-21211634 | Arabidopsis thaliana |
AT5G52230:CDS:6.2 | 1586 | Chr5: 21208097-21209682 | Arabidopsis thaliana |
AT5G52230:CDS:5.2 | 201 | Chr5: 21209782-21209982 | Arabidopsis thaliana |
AT5G52230:CDS:4.2 | 124 | Chr5: 21210090-21210213 | Arabidopsis thaliana |
AT5G52230:CDS:3.2 | 147 | Chr5: 21210327-21210473 | Arabidopsis thaliana |
AT5G52230:CDS:2.2 | 99 | Chr5: 21210609-21210707 | Arabidopsis thaliana |
AT5G52230:CDS:1.2 | 84 | Chr5: 21211551-21211634 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G52230:exon:11 | 1899 | Chr5: 21207784-21209682 | Arabidopsis thaliana |
AT5G52230:exon:3 | 522 | Chr5: 21211551-21212072 | Arabidopsis thaliana |
AT5G52230:exon:10 | 1796 | Chr5: 21207887-21209682 | Arabidopsis thaliana |
AT5G52230:exon:1 | 178 | Chr5: 21211880-21212057 | Arabidopsis thaliana |
AT5G52230:exon:9 | 1785 | Chr5: 21207898-21209682 | Arabidopsis thaliana |
AT5G52230:exon:8 | 201 | Chr5: 21209782-21209982 | Arabidopsis thaliana |
AT5G52230:exon:7 | 124 | Chr5: 21210090-21210213 | Arabidopsis thaliana |
AT5G52230:exon:6 | 147 | Chr5: 21210327-21210473 | Arabidopsis thaliana |
AT5G52230:exon:5 | 99 | Chr5: 21210609-21210707 | Arabidopsis thaliana |
AT5G52230:exon:4 | 128 | Chr5: 21211551-21211678 | Arabidopsis thaliana |
AT5G52230:exon:2 | 291 | Chr5: 21211782-21212072 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G52230:five_prime_UTR:3 | 438 | Chr5: 21211635-21212072 | Arabidopsis thaliana |
AT5G52230:five_prime_UTR:1 | 178 | Chr5: 21211880-21212057 | Arabidopsis thaliana |
AT5G52230:five_prime_UTR:4 | 44 | Chr5: 21211635-21211678 | Arabidopsis thaliana |
AT5G52230:five_prime_UTR:2 | 291 | Chr5: 21211782-21212072 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G52230.1 | 2992 | Chr5: 21207784-21212072 |
AT5G52230.3 | 2673 | Chr5: 21207887-21212057 |
AT5G52230.2 | 2775 | Chr5: 21207898-21212072 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G52230:three_prime_UTR:3 | 313 | Chr5: 21207784-21208096 | Arabidopsis thaliana |
AT5G52230:three_prime_UTR:2 | 210 | Chr5: 21207887-21208096 | Arabidopsis thaliana |
AT5G52230:three_prime_UTR:1 | 199 | Chr5: 21207898-21208096 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE76380 | 50 | Chr5: 21212010-21212059 | Arabidopsis thaliana |
AT5TE76385 | 116 | Chr5: 21212060-21212175 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE76380:transposon_fragment:1 | 50 | Chr5: 21212010-21212059 | Arabidopsis thaliana |
AT5TE76385:transposon_fragment:1 | 116 | Chr5: 21212060-21212175 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
MBD13_ARATH | function | Probable transcriptional regulator. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
methyl-CpG binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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