External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 29, Exons: 17, Five Prime UTRs: 10, Gene: 1, mRNAs: 6, miRNA: 1, miRNA Primary Transcript: 1, Three Prime UTRs: 5, Transposable Elements: 2, Transposon Fragments: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G52070:CDS:2 | 7 | Chr5: 21162202-21162208 | Arabidopsis thaliana |
AT5G52070:CDS:5 | 242 | Chr5: 21163727-21163968 | Arabidopsis thaliana |
AT5G52070:CDS:6 | 117 | Chr5: 21164080-21164196 | Arabidopsis thaliana |
AT5G52070:CDS:7 | 43 | Chr5: 21164340-21164382 | Arabidopsis thaliana |
AT5G52070:CDS:8 | 251 | Chr5: 21164467-21164717 | Arabidopsis thaliana |
AT5G52070:CDS:1 | 93 | Chr5: 21162116-21162208 | Arabidopsis thaliana |
AT5G52070:CDS:3 | 70 | Chr5: 21163579-21163648 | Arabidopsis thaliana |
AT5G52070:CDS:5.1 | 242 | Chr5: 21163727-21163968 | Arabidopsis thaliana |
AT5G52070:CDS:6.1 | 117 | Chr5: 21164080-21164196 | Arabidopsis thaliana |
AT5G52070:CDS:7.1 | 43 | Chr5: 21164340-21164382 | Arabidopsis thaliana |
AT5G52070:CDS:8.1 | 251 | Chr5: 21164467-21164717 | Arabidopsis thaliana |
AT5G52070:CDS:4 | 258 | Chr5: 21163711-21163968 | Arabidopsis thaliana |
AT5G52070:CDS:6.2 | 117 | Chr5: 21164080-21164196 | Arabidopsis thaliana |
AT5G52070:CDS:7.2 | 43 | Chr5: 21164340-21164382 | Arabidopsis thaliana |
AT5G52070:CDS:8.2 | 251 | Chr5: 21164467-21164717 | Arabidopsis thaliana |
AT5G52070:CDS:1.1 | 93 | Chr5: 21162116-21162208 | Arabidopsis thaliana |
AT5G52070:CDS:3.1 | 70 | Chr5: 21163579-21163648 | Arabidopsis thaliana |
AT5G52070:CDS:5.2 | 242 | Chr5: 21163727-21163968 | Arabidopsis thaliana |
AT5G52070:CDS:6.3 | 117 | Chr5: 21164080-21164196 | Arabidopsis thaliana |
AT5G52070:CDS:7.3 | 43 | Chr5: 21164340-21164382 | Arabidopsis thaliana |
AT5G52070:CDS:8.3 | 251 | Chr5: 21164467-21164717 | Arabidopsis thaliana |
AT5G52070:CDS:4.1 | 258 | Chr5: 21163711-21163968 | Arabidopsis thaliana |
AT5G52070:CDS:6.4 | 117 | Chr5: 21164080-21164196 | Arabidopsis thaliana |
AT5G52070:CDS:7.4 | 43 | Chr5: 21164340-21164382 | Arabidopsis thaliana |
AT5G52070:CDS:8.4 | 251 | Chr5: 21164467-21164717 | Arabidopsis thaliana |
AT5G52070:CDS:4.2 | 258 | Chr5: 21163711-21163968 | Arabidopsis thaliana |
AT5G52070:CDS:6.5 | 117 | Chr5: 21164080-21164196 | Arabidopsis thaliana |
AT5G52070:CDS:7.5 | 43 | Chr5: 21164340-21164382 | Arabidopsis thaliana |
AT5G52070:CDS:8.5 | 251 | Chr5: 21164467-21164717 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G52070:exon:1 | 222 | Chr5: 21161132-21161353 | Arabidopsis thaliana |
AT5G52070:exon:5 | 113 | Chr5: 21162096-21162208 | Arabidopsis thaliana |
AT5G52070:exon:9 | 390 | Chr5: 21163579-21163968 | Arabidopsis thaliana |
AT5G52070:exon:17 | 742 | Chr5: 21164824-21165565 | Arabidopsis thaliana |
AT5G52070:exon:2 | 131 | Chr5: 21161223-21161353 | Arabidopsis thaliana |
AT5G52070:exon:4 | 134 | Chr5: 21162075-21162208 | Arabidopsis thaliana |
AT5G52070:exon:8 | 70 | Chr5: 21163579-21163648 | Arabidopsis thaliana |
AT5G52070:exon:10 | 242 | Chr5: 21163727-21163968 | Arabidopsis thaliana |
AT5G52070:exon:16 | 307 | Chr5: 21164824-21165130 | Arabidopsis thaliana |
AT5G52070:exon:3 | 111 | Chr5: 21161243-21161353 | Arabidopsis thaliana |
AT5G52070:exon:6 | 1873 | Chr5: 21162096-21163968 | Arabidopsis thaliana |
AT5G52070:exon:14 | 242 | Chr5: 21164824-21165065 | Arabidopsis thaliana |
AT5G52070:exon:7 | 1753 | Chr5: 21162216-21163968 | Arabidopsis thaliana |
AT5G52070:exon:11 | 117 | Chr5: 21164080-21164196 | Arabidopsis thaliana |
AT5G52070:exon:12 | 43 | Chr5: 21164340-21164382 | Arabidopsis thaliana |
AT5G52070:exon:13 | 271 | Chr5: 21164467-21164737 | Arabidopsis thaliana |
AT5G52070:exon:15 | 272 | Chr5: 21164824-21165095 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G52070:five_prime_UTR:6 | 106 | Chr5: 21162096-21162201 | Arabidopsis thaliana |
AT5G52070:five_prime_UTR:5 | 20 | Chr5: 21162096-21162115 | Arabidopsis thaliana |
AT5G52070:five_prime_UTR:1 | 222 | Chr5: 21161132-21161353 | Arabidopsis thaliana |
AT5G52070:five_prime_UTR:7 | 113 | Chr5: 21162096-21162208 | Arabidopsis thaliana |
AT5G52070:five_prime_UTR:10 | 132 | Chr5: 21163579-21163710 | Arabidopsis thaliana |
AT5G52070:five_prime_UTR:2 | 131 | Chr5: 21161223-21161353 | Arabidopsis thaliana |
AT5G52070:five_prime_UTR:4 | 41 | Chr5: 21162075-21162115 | Arabidopsis thaliana |
AT5G52070:five_prime_UTR:3 | 111 | Chr5: 21161243-21161353 | Arabidopsis thaliana |
AT5G52070:five_prime_UTR:8 | 1615 | Chr5: 21162096-21163710 | Arabidopsis thaliana |
AT5G52070:five_prime_UTR:9 | 1495 | Chr5: 21162216-21163710 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G07875 | MIR4245 | 147 | Chr5: 21161506-21161652 | A. thaliana | microRNA ath-MIR4245 precursor;(source:Araport11) | NULL | ath-MIR4245 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G52070.3 | 1750 | Chr5: 21161132-21165565 |
AT5G52070.1 | 1820 | Chr5: 21161132-21165565 |
AT5G52070.2 | 1898 | Chr5: 21161132-21165565 |
AT5G52070.4 | 1315 | Chr5: 21161223-21165130 |
AT5G52070.5 | 2657 | Chr5: 21161243-21165065 |
AT5G52070.6 | 2456 | Chr5: 21162216-21165095 |
miRNA Primary Transcripts
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G07875.1 | 147 | Chr5: 21161506-21161652 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G52070:three_prime_UTR:5 | 742 | Chr5: 21164824-21165565 | Arabidopsis thaliana |
AT5G52070:three_prime_UTR:4 | 307 | Chr5: 21164824-21165130 | Arabidopsis thaliana |
AT5G52070:three_prime_UTR:2 | 242 | Chr5: 21164824-21165065 | Arabidopsis thaliana |
AT5G52070:three_prime_UTR:1 | 20 | Chr5: 21164718-21164737 | Arabidopsis thaliana |
AT5G52070:three_prime_UTR:3 | 272 | Chr5: 21164824-21165095 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE76210 | 356 | Chr5: 21162772-21163127 | Arabidopsis thaliana |
AT5TE76215 | 33 | Chr5: 21163128-21163160 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE76210:transposon_fragment:1 | 356 | Chr5: 21162772-21163127 | Arabidopsis thaliana |
AT5TE76215:transposon_fragment:1 | 33 | Chr5: 21163128-21163160 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...