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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G49990:CDS:13 | 380 | Chr5: 20337864-20338243 | Arabidopsis thaliana |
AT5G49990:CDS:12 | 78 | Chr5: 20338374-20338451 | Arabidopsis thaliana |
AT5G49990:CDS:11 | 92 | Chr5: 20338534-20338625 | Arabidopsis thaliana |
AT5G49990:CDS:10 | 59 | Chr5: 20338709-20338767 | Arabidopsis thaliana |
AT5G49990:CDS:9 | 87 | Chr5: 20338883-20338969 | Arabidopsis thaliana |
AT5G49990:CDS:8 | 97 | Chr5: 20339211-20339307 | Arabidopsis thaliana |
AT5G49990:CDS:7 | 185 | Chr5: 20339438-20339622 | Arabidopsis thaliana |
AT5G49990:CDS:6 | 60 | Chr5: 20339767-20339826 | Arabidopsis thaliana |
AT5G49990:CDS:5 | 76 | Chr5: 20339913-20339988 | Arabidopsis thaliana |
AT5G49990:CDS:4 | 101 | Chr5: 20340073-20340173 | Arabidopsis thaliana |
AT5G49990:CDS:3 | 177 | Chr5: 20340300-20340476 | Arabidopsis thaliana |
AT5G49990:CDS:2 | 98 | Chr5: 20340564-20340661 | Arabidopsis thaliana |
AT5G49990:CDS:1 | 97 | Chr5: 20341091-20341187 | Arabidopsis thaliana |
AT5G49990:CDS:13.1 | 380 | Chr5: 20337864-20338243 | Arabidopsis thaliana |
AT5G49990:CDS:12.1 | 78 | Chr5: 20338374-20338451 | Arabidopsis thaliana |
AT5G49990:CDS:11.1 | 92 | Chr5: 20338534-20338625 | Arabidopsis thaliana |
AT5G49990:CDS:10.1 | 59 | Chr5: 20338709-20338767 | Arabidopsis thaliana |
AT5G49990:CDS:9.1 | 87 | Chr5: 20338883-20338969 | Arabidopsis thaliana |
AT5G49990:CDS:8.1 | 97 | Chr5: 20339211-20339307 | Arabidopsis thaliana |
AT5G49990:CDS:7.1 | 185 | Chr5: 20339438-20339622 | Arabidopsis thaliana |
AT5G49990:CDS:6.1 | 60 | Chr5: 20339767-20339826 | Arabidopsis thaliana |
AT5G49990:CDS:5.1 | 76 | Chr5: 20339913-20339988 | Arabidopsis thaliana |
AT5G49990:CDS:4.1 | 101 | Chr5: 20340073-20340173 | Arabidopsis thaliana |
AT5G49990:CDS:3.1 | 177 | Chr5: 20340300-20340476 | Arabidopsis thaliana |
AT5G49990:CDS:2.1 | 98 | Chr5: 20340564-20340661 | Arabidopsis thaliana |
AT5G49990:CDS:1.1 | 97 | Chr5: 20341091-20341187 | Arabidopsis thaliana |
AT5G49990:CDS:13.2 | 380 | Chr5: 20337864-20338243 | Arabidopsis thaliana |
AT5G49990:CDS:12.2 | 78 | Chr5: 20338374-20338451 | Arabidopsis thaliana |
AT5G49990:CDS:11.2 | 92 | Chr5: 20338534-20338625 | Arabidopsis thaliana |
AT5G49990:CDS:10.2 | 59 | Chr5: 20338709-20338767 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G49990:exon:1 | 269 | Chr5: 20341767-20342035 | Arabidopsis thaliana |
AT5G49990:exon:19 | 658 | Chr5: 20337586-20338243 | Arabidopsis thaliana |
AT5G49990:exon:2 | 289 | Chr5: 20341747-20342035 | Arabidopsis thaliana |
AT5G49990:exon:18 | 652 | Chr5: 20337592-20338243 | Arabidopsis thaliana |
AT5G49990:exon:5 | 107 | Chr5: 20341091-20341197 | Arabidopsis thaliana |
AT5G49990:exon:3 | 414 | Chr5: 20341293-20341706 | Arabidopsis thaliana |
AT5G49990:exon:17 | 603 | Chr5: 20337641-20338243 | Arabidopsis thaliana |
AT5G49990:exon:16 | 78 | Chr5: 20338374-20338451 | Arabidopsis thaliana |
AT5G49990:exon:15 | 92 | Chr5: 20338534-20338625 | Arabidopsis thaliana |
AT5G49990:exon:14 | 59 | Chr5: 20338709-20338767 | Arabidopsis thaliana |
AT5G49990:exon:13 | 87 | Chr5: 20338883-20338969 | Arabidopsis thaliana |
AT5G49990:exon:12 | 97 | Chr5: 20339211-20339307 | Arabidopsis thaliana |
AT5G49990:exon:11 | 185 | Chr5: 20339438-20339622 | Arabidopsis thaliana |
AT5G49990:exon:10 | 60 | Chr5: 20339767-20339826 | Arabidopsis thaliana |
AT5G49990:exon:9 | 76 | Chr5: 20339913-20339988 | Arabidopsis thaliana |
AT5G49990:exon:8 | 101 | Chr5: 20340073-20340173 | Arabidopsis thaliana |
AT5G49990:exon:7 | 177 | Chr5: 20340300-20340476 | Arabidopsis thaliana |
AT5G49990:exon:6 | 98 | Chr5: 20340564-20340661 | Arabidopsis thaliana |
AT5G49990:exon:4 | 233 | Chr5: 20341091-20341323 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G49990:five_prime_UTR:1 | 269 | Chr5: 20341767-20342035 | Arabidopsis thaliana |
AT5G49990:five_prime_UTR:2 | 289 | Chr5: 20341747-20342035 | Arabidopsis thaliana |
AT5G49990:five_prime_UTR:5 | 10 | Chr5: 20341188-20341197 | Arabidopsis thaliana |
AT5G49990:five_prime_UTR:3 | 414 | Chr5: 20341293-20341706 | Arabidopsis thaliana |
AT5G49990:five_prime_UTR:4 | 136 | Chr5: 20341188-20341323 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G49990.1 | 2144 | Chr5: 20337586-20342035 |
AT5G49990.2 | 2164 | Chr5: 20337586-20342035 |
AT5G49990.3 | 2283 | Chr5: 20337592-20341706 |
AT5G49990.4 | 1946 | Chr5: 20337641-20341323 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G49990:three_prime_UTR:3 | 278 | Chr5: 20337586-20337863 | Arabidopsis thaliana |
AT5G49990:three_prime_UTR:2 | 272 | Chr5: 20337592-20337863 | Arabidopsis thaliana |
AT5G49990:three_prime_UTR:1 | 223 | Chr5: 20337641-20337863 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
NAT5_ARATH | similarity | Belongs to the nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) family. |
NAT5_ARATH | tissue specificity | Weakly expressed in the vasculature of developing leaves. |
Function
Gene Ontology
cellular component | |
---|---|
plasmodesma | ECO |
membrane | ECO |
molecular function | |
transmembrane transporter activity | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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