External Links
- Aracyc
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- ATTED-II
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G49110:CDS:1 | 1034 | Chr5: 19900203-19901236 | Arabidopsis thaliana |
AT5G49110:CDS:2 | 82 | Chr5: 19901311-19901392 | Arabidopsis thaliana |
AT5G49110:CDS:3 | 192 | Chr5: 19901495-19901686 | Arabidopsis thaliana |
AT5G49110:CDS:4 | 65 | Chr5: 19901804-19901868 | Arabidopsis thaliana |
AT5G49110:CDS:5 | 160 | Chr5: 19901943-19902102 | Arabidopsis thaliana |
AT5G49110:CDS:6 | 246 | Chr5: 19902281-19902526 | Arabidopsis thaliana |
AT5G49110:CDS:7 | 117 | Chr5: 19902609-19902725 | Arabidopsis thaliana |
AT5G49110:CDS:8 | 192 | Chr5: 19902935-19903126 | Arabidopsis thaliana |
AT5G49110:CDS:9 | 88 | Chr5: 19903218-19903305 | Arabidopsis thaliana |
AT5G49110:CDS:11 | 905 | Chr5: 19903553-19904457 | Arabidopsis thaliana |
AT5G49110:CDS:13 | 502 | Chr5: 19904550-19905051 | Arabidopsis thaliana |
AT5G49110:CDS:14 | 191 | Chr5: 19905132-19905322 | Arabidopsis thaliana |
AT5G49110:CDS:16 | 522 | Chr5: 19905404-19905925 | Arabidopsis thaliana |
AT5G49110:CDS:1.1 | 1034 | Chr5: 19900203-19901236 | Arabidopsis thaliana |
AT5G49110:CDS:2.1 | 82 | Chr5: 19901311-19901392 | Arabidopsis thaliana |
AT5G49110:CDS:3.1 | 192 | Chr5: 19901495-19901686 | Arabidopsis thaliana |
AT5G49110:CDS:4.1 | 65 | Chr5: 19901804-19901868 | Arabidopsis thaliana |
AT5G49110:CDS:5.1 | 160 | Chr5: 19901943-19902102 | Arabidopsis thaliana |
AT5G49110:CDS:6.1 | 246 | Chr5: 19902281-19902526 | Arabidopsis thaliana |
AT5G49110:CDS:7.1 | 117 | Chr5: 19902609-19902725 | Arabidopsis thaliana |
AT5G49110:CDS:8.1 | 192 | Chr5: 19902935-19903126 | Arabidopsis thaliana |
AT5G49110:CDS:9.1 | 88 | Chr5: 19903218-19903305 | Arabidopsis thaliana |
AT5G49110:CDS:11.1 | 905 | Chr5: 19903553-19904457 | Arabidopsis thaliana |
AT5G49110:CDS:12 | 538 | Chr5: 19904514-19905051 | Arabidopsis thaliana |
AT5G49110:CDS:15 | 794 | Chr5: 19905132-19905925 | Arabidopsis thaliana |
AT5G49110:CDS:1.2 | 1034 | Chr5: 19900203-19901236 | Arabidopsis thaliana |
AT5G49110:CDS:2.2 | 82 | Chr5: 19901311-19901392 | Arabidopsis thaliana |
AT5G49110:CDS:3.2 | 192 | Chr5: 19901495-19901686 | Arabidopsis thaliana |
AT5G49110:CDS:4.2 | 65 | Chr5: 19901804-19901868 | Arabidopsis thaliana |
AT5G49110:CDS:5.2 | 160 | Chr5: 19901943-19902102 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G49110:exon:1 | 1087 | Chr5: 19900150-19901236 | Arabidopsis thaliana |
AT5G49110:exon:19 | 768 | Chr5: 19905404-19906171 | Arabidopsis thaliana |
AT5G49110:exon:10 | 88 | Chr5: 19903218-19903305 | Arabidopsis thaliana |
AT5G49110:exon:16 | 794 | Chr5: 19905132-19905925 | Arabidopsis thaliana |
AT5G49110:exon:13 | 538 | Chr5: 19904514-19905051 | Arabidopsis thaliana |
AT5G49110:exon:17 | 861 | Chr5: 19905132-19905992 | Arabidopsis thaliana |
AT5G49110:exon:2 | 1034 | Chr5: 19900203-19901236 | Arabidopsis thaliana |
AT5G49110:exon:3 | 82 | Chr5: 19901311-19901392 | Arabidopsis thaliana |
AT5G49110:exon:4 | 192 | Chr5: 19901495-19901686 | Arabidopsis thaliana |
AT5G49110:exon:5 | 65 | Chr5: 19901804-19901868 | Arabidopsis thaliana |
AT5G49110:exon:6 | 160 | Chr5: 19901943-19902102 | Arabidopsis thaliana |
AT5G49110:exon:7 | 246 | Chr5: 19902281-19902526 | Arabidopsis thaliana |
AT5G49110:exon:8 | 117 | Chr5: 19902609-19902725 | Arabidopsis thaliana |
AT5G49110:exon:9 | 192 | Chr5: 19902935-19903126 | Arabidopsis thaliana |
AT5G49110:exon:11 | 85 | Chr5: 19903221-19903305 | Arabidopsis thaliana |
AT5G49110:exon:12 | 905 | Chr5: 19903553-19904457 | Arabidopsis thaliana |
AT5G49110:exon:14 | 502 | Chr5: 19904550-19905051 | Arabidopsis thaliana |
AT5G49110:exon:15 | 191 | Chr5: 19905132-19905322 | Arabidopsis thaliana |
AT5G49110:exon:18 | 707 | Chr5: 19905404-19906110 | Arabidopsis thaliana |
AT5G07335:exon:1 | 153 | Chr5: 19902818-19902970 | Arabidopsis thaliana |
AT5G07345:exon:1 | 165 | Chr5: 19903159-19903323 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G49110:five_prime_UTR:1 | 53 | Chr5: 19900150-19900202 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G07335 | U4-1* | 153 | Chr5: 19902818-19902970 | A. thaliana | U4;(source:Araport11) | NULL | U4-1* | |||
AT5G07345 | U1a* | 165 | Chr5: 19903159-19903323 | A. thaliana | U1;(source:Araport11) | NULL | U1a* |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G49110.3 | 4595 | Chr5: 19900150-19906171 |
AT5G49110.2 | 4413 | Chr5: 19900203-19905925 |
AT5G49110.1 | 4477 | Chr5: 19900203-19905992 |
AT5G49110.4 | 4478 | Chr5: 19900203-19906110 |
snRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G07335.1 | 153 | Chr5: 19902818-19902970 |
AT5G07345.1 | 165 | Chr5: 19903159-19903323 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G49110:three_prime_UTR:3 | 246 | Chr5: 19905926-19906171 | Arabidopsis thaliana |
AT5G49110:three_prime_UTR:1 | 67 | Chr5: 19905926-19905992 | Arabidopsis thaliana |
AT5G49110:three_prime_UTR:2 | 185 | Chr5: 19905926-19906110 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
DNA repair | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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