External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 14, Exons: 11, Five Prime UTRs: 3, mRNAs: 2, Three Prime UTRs: 2, Transposable Elements: 2, Transposon Fragments: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G48830:CDS:8 | 169 | Chr5: 19800269-19800437 | Arabidopsis thaliana |
AT5G48830:CDS:7 | 260 | Chr5: 19800519-19800778 | Arabidopsis thaliana |
AT5G48830:CDS:6 | 330 | Chr5: 19800862-19801191 | Arabidopsis thaliana |
AT5G48830:CDS:4 | 138 | Chr5: 19801277-19801414 | Arabidopsis thaliana |
AT5G48830:CDS:3 | 217 | Chr5: 19801769-19801985 | Arabidopsis thaliana |
AT5G48830:CDS:2 | 306 | Chr5: 19802112-19802417 | Arabidopsis thaliana |
AT5G48830:CDS:1 | 116 | Chr5: 19802510-19802625 | Arabidopsis thaliana |
AT5G48830:CDS:9 | 166 | Chr5: 19800269-19800434 | Arabidopsis thaliana |
AT5G48830:CDS:7.1 | 260 | Chr5: 19800519-19800778 | Arabidopsis thaliana |
AT5G48830:CDS:5 | 351 | Chr5: 19800862-19801212 | Arabidopsis thaliana |
AT5G48830:CDS:4.1 | 138 | Chr5: 19801277-19801414 | Arabidopsis thaliana |
AT5G48830:CDS:3.1 | 217 | Chr5: 19801769-19801985 | Arabidopsis thaliana |
AT5G48830:CDS:2.1 | 306 | Chr5: 19802112-19802417 | Arabidopsis thaliana |
AT5G48830:CDS:1.1 | 116 | Chr5: 19802510-19802625 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G48830:exon:11 | 485 | Chr5: 19799953-19800437 | Arabidopsis thaliana |
AT5G48830:exon:8 | 330 | Chr5: 19800862-19801191 | Arabidopsis thaliana |
AT5G48830:exon:2 | 65 | Chr5: 19802951-19803015 | Arabidopsis thaliana |
AT5G48830:exon:10 | 266 | Chr5: 19800169-19800434 | Arabidopsis thaliana |
AT5G48830:exon:9 | 260 | Chr5: 19800519-19800778 | Arabidopsis thaliana |
AT5G48830:exon:7 | 351 | Chr5: 19800862-19801212 | Arabidopsis thaliana |
AT5G48830:exon:6 | 138 | Chr5: 19801277-19801414 | Arabidopsis thaliana |
AT5G48830:exon:5 | 217 | Chr5: 19801769-19801985 | Arabidopsis thaliana |
AT5G48830:exon:4 | 306 | Chr5: 19802112-19802417 | Arabidopsis thaliana |
AT5G48830:exon:3 | 188 | Chr5: 19802510-19802697 | Arabidopsis thaliana |
AT5G48830:exon:1 | 148 | Chr5: 19802951-19803098 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G48830:five_prime_UTR:2 | 65 | Chr5: 19802951-19803015 | Arabidopsis thaliana |
AT5G48830:five_prime_UTR:3 | 72 | Chr5: 19802626-19802697 | Arabidopsis thaliana |
AT5G48830:five_prime_UTR:1 | 148 | Chr5: 19802951-19803098 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G48830.1 | 1989 | Chr5: 19799953-19803015 |
AT5G48830.2 | 1874 | Chr5: 19800169-19803098 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G48830:three_prime_UTR:2 | 316 | Chr5: 19799953-19800268 | Arabidopsis thaliana |
AT5G48830:three_prime_UTR:1 | 100 | Chr5: 19800169-19800268 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE71260 | 729 | Chr5: 19799229-19799957 | Arabidopsis thaliana |
AT5TE71265 | 44 | Chr5: 19799958-19800001 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE71260:transposon_fragment:1 | 729 | Chr5: 19799229-19799957 | Arabidopsis thaliana |
AT5TE71265:transposon_fragment:1 | 44 | Chr5: 19799958-19800001 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...