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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 24, Exons: 15, Five Prime UTRs: 5, mRNAs: 6, Three Prime UTRs: 8, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G48655:CDS:4 | 225 | Chr5: 19731575-19731799 | Arabidopsis thaliana |
AT5G48655:CDS:3 | 116 | Chr5: 19731885-19732000 | Arabidopsis thaliana |
AT5G48655:CDS:2 | 58 | Chr5: 19732114-19732171 | Arabidopsis thaliana |
AT5G48655:CDS:1 | 213 | Chr5: 19732274-19732486 | Arabidopsis thaliana |
AT5G48655:CDS:4.1 | 225 | Chr5: 19731575-19731799 | Arabidopsis thaliana |
AT5G48655:CDS:3.1 | 116 | Chr5: 19731885-19732000 | Arabidopsis thaliana |
AT5G48655:CDS:2.1 | 58 | Chr5: 19732114-19732171 | Arabidopsis thaliana |
AT5G48655:CDS:1.1 | 213 | Chr5: 19732274-19732486 | Arabidopsis thaliana |
AT5G48655:CDS:4.2 | 225 | Chr5: 19731575-19731799 | Arabidopsis thaliana |
AT5G48655:CDS:3.2 | 116 | Chr5: 19731885-19732000 | Arabidopsis thaliana |
AT5G48655:CDS:2.2 | 58 | Chr5: 19732114-19732171 | Arabidopsis thaliana |
AT5G48655:CDS:1.2 | 213 | Chr5: 19732274-19732486 | Arabidopsis thaliana |
AT5G48655:CDS:4.3 | 225 | Chr5: 19731575-19731799 | Arabidopsis thaliana |
AT5G48655:CDS:3.3 | 116 | Chr5: 19731885-19732000 | Arabidopsis thaliana |
AT5G48655:CDS:2.3 | 58 | Chr5: 19732114-19732171 | Arabidopsis thaliana |
AT5G48655:CDS:1.3 | 213 | Chr5: 19732274-19732486 | Arabidopsis thaliana |
AT5G48655:CDS:4.4 | 225 | Chr5: 19731575-19731799 | Arabidopsis thaliana |
AT5G48655:CDS:3.4 | 116 | Chr5: 19731885-19732000 | Arabidopsis thaliana |
AT5G48655:CDS:2.4 | 58 | Chr5: 19732114-19732171 | Arabidopsis thaliana |
AT5G48655:CDS:1.4 | 213 | Chr5: 19732274-19732486 | Arabidopsis thaliana |
AT5G48655:CDS:4.5 | 225 | Chr5: 19731575-19731799 | Arabidopsis thaliana |
AT5G48655:CDS:3.5 | 116 | Chr5: 19731885-19732000 | Arabidopsis thaliana |
AT5G48655:CDS:2.5 | 58 | Chr5: 19732114-19732171 | Arabidopsis thaliana |
AT5G48655:CDS:1.5 | 213 | Chr5: 19732274-19732486 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G48655:exon:15 | 488 | Chr5: 19730380-19730867 | Arabidopsis thaliana |
AT5G48655:exon:14 | 1052 | Chr5: 19730390-19731441 | Arabidopsis thaliana |
AT5G48655:exon:2 | 279 | Chr5: 19732878-19733156 | Arabidopsis thaliana |
AT5G48655:exon:4 | 752 | Chr5: 19732274-19733025 | Arabidopsis thaliana |
AT5G48655:exon:13 | 464 | Chr5: 19730404-19730867 | Arabidopsis thaliana |
AT5G48655:exon:10 | 151 | Chr5: 19731291-19731441 | Arabidopsis thaliana |
AT5G48655:exon:12 | 1038 | Chr5: 19730404-19731441 | Arabidopsis thaliana |
AT5G48655:exon:8 | 253 | Chr5: 19731547-19731799 | Arabidopsis thaliana |
AT5G48655:exon:1 | 122 | Chr5: 19732916-19733037 | Arabidopsis thaliana |
AT5G48655:exon:11 | 292 | Chr5: 19731150-19731441 | Arabidopsis thaliana |
AT5G48655:exon:9 | 257 | Chr5: 19731543-19731799 | Arabidopsis thaliana |
AT5G48655:exon:7 | 116 | Chr5: 19731885-19732000 | Arabidopsis thaliana |
AT5G48655:exon:6 | 58 | Chr5: 19732114-19732171 | Arabidopsis thaliana |
AT5G48655:exon:5 | 243 | Chr5: 19732274-19732516 | Arabidopsis thaliana |
AT5G48655:exon:3 | 166 | Chr5: 19732878-19733043 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G48655:five_prime_UTR:2 | 279 | Chr5: 19732878-19733156 | Arabidopsis thaliana |
AT5G48655:five_prime_UTR:4 | 539 | Chr5: 19732487-19733025 | Arabidopsis thaliana |
AT5G48655:five_prime_UTR:1 | 122 | Chr5: 19732916-19733037 | Arabidopsis thaliana |
AT5G48655:five_prime_UTR:5 | 30 | Chr5: 19732487-19732516 | Arabidopsis thaliana |
AT5G48655:five_prime_UTR:3 | 166 | Chr5: 19732878-19733043 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G48655.3 | 1818 | Chr5: 19730380-19733025 |
AT5G48655.2 | 2001 | Chr5: 19730390-19733156 |
AT5G48655.4 | 2217 | Chr5: 19730404-19733025 |
AT5G48655.6 | 1407 | Chr5: 19730404-19733037 |
AT5G48655.5 | 1830 | Chr5: 19730404-19733037 |
AT5G48655.1 | 1132 | Chr5: 19731150-19733043 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G48655:three_prime_UTR:8 | 488 | Chr5: 19730380-19730867 | Arabidopsis thaliana |
AT5G48655:three_prime_UTR:7 | 1052 | Chr5: 19730390-19731441 | Arabidopsis thaliana |
AT5G48655:three_prime_UTR:6 | 464 | Chr5: 19730404-19730867 | Arabidopsis thaliana |
AT5G48655:three_prime_UTR:3 | 151 | Chr5: 19731291-19731441 | Arabidopsis thaliana |
AT5G48655:three_prime_UTR:5 | 1038 | Chr5: 19730404-19731441 | Arabidopsis thaliana |
AT5G48655:three_prime_UTR:1 | 28 | Chr5: 19731547-19731574 | Arabidopsis thaliana |
AT5G48655:three_prime_UTR:4 | 292 | Chr5: 19731150-19731441 | Arabidopsis thaliana |
AT5G48655:three_prime_UTR:2 | 32 | Chr5: 19731543-19731574 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE71000 | 311 | Chr5: 19733130-19733440 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE71000:transposon_fragment:1 | 311 | Chr5: 19733130-19733440 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
nucleolus | ECO |
molecular function | |
SUMO binding | ECO |
ubiquitin protein ligase activity | ECO |
metal ion binding | ECO |
biological process | |
ubiquitin-dependent protein catabolic process | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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