External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G48340:CDS:1 | 343 | Chr5: 19590785-19591127 | Arabidopsis thaliana |
AT5G48340:CDS:4 | 1115 | Chr5: 19591208-19592322 | Arabidopsis thaliana |
AT5G48340:CDS:7 | 75 | Chr5: 19592413-19592487 | Arabidopsis thaliana |
AT5G48340:CDS:1.1 | 343 | Chr5: 19590785-19591127 | Arabidopsis thaliana |
AT5G48340:CDS:3 | 1113 | Chr5: 19591208-19592320 | Arabidopsis thaliana |
AT5G48340:CDS:6 | 65 | Chr5: 19592413-19592477 | Arabidopsis thaliana |
AT5G48340:CDS:1.2 | 343 | Chr5: 19590785-19591127 | Arabidopsis thaliana |
AT5G48340:CDS:2 | 138 | Chr5: 19591208-19591345 | Arabidopsis thaliana |
AT5G48340:CDS:5 | 626 | Chr5: 19591697-19592322 | Arabidopsis thaliana |
AT5G48340:CDS:7.1 | 75 | Chr5: 19592413-19592487 | Arabidopsis thaliana |
AT5G48340:CDS:1.3 | 343 | Chr5: 19590785-19591127 | Arabidopsis thaliana |
AT5G48340:CDS:4.1 | 1115 | Chr5: 19591208-19592322 | Arabidopsis thaliana |
AT5G48340:CDS:7.2 | 75 | Chr5: 19592413-19592487 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G48340:exon:1 | 306 | Chr5: 19590309-19590614 | Arabidopsis thaliana |
AT5G48340:exon:11 | 410 | Chr5: 19592630-19593039 | Arabidopsis thaliana |
AT5G48340:exon:6 | 1113 | Chr5: 19591208-19592320 | Arabidopsis thaliana |
AT5G48340:exon:2 | 179 | Chr5: 19590436-19590614 | Arabidopsis thaliana |
AT5G48340:exon:4 | 414 | Chr5: 19590714-19591127 | Arabidopsis thaliana |
AT5G48340:exon:5 | 138 | Chr5: 19591208-19591345 | Arabidopsis thaliana |
AT5G48340:exon:8 | 626 | Chr5: 19591697-19592322 | Arabidopsis thaliana |
AT5G48340:exon:10 | 320 | Chr5: 19592630-19592949 | Arabidopsis thaliana |
AT5G48340:exon:3 | 479 | Chr5: 19590649-19591127 | Arabidopsis thaliana |
AT5G48340:exon:7 | 1115 | Chr5: 19591208-19592322 | Arabidopsis thaliana |
AT5G48340:exon:9 | 114 | Chr5: 19592413-19592526 | Arabidopsis thaliana |
AT5G48340:exon:12 | 446 | Chr5: 19592630-19593075 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G48340:five_prime_UTR:1 | 306 | Chr5: 19590309-19590614 | Arabidopsis thaliana |
AT5G48340:five_prime_UTR:2 | 179 | Chr5: 19590436-19590614 | Arabidopsis thaliana |
AT5G48340:five_prime_UTR:4 | 71 | Chr5: 19590714-19590784 | Arabidopsis thaliana |
AT5G48340:five_prime_UTR:3 | 136 | Chr5: 19590649-19590784 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G48340.1 | 2359 | Chr5: 19590309-19593039 |
AT5G48340.2 | 2140 | Chr5: 19590436-19592949 |
AT5G48340.3 | 1791 | Chr5: 19590436-19592949 |
AT5G48340.4 | 2154 | Chr5: 19590649-19593075 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G48340:three_prime_UTR:4 | 410 | Chr5: 19592630-19593039 | Arabidopsis thaliana |
AT5G48340:three_prime_UTR:1 | 49 | Chr5: 19592478-19592526 | Arabidopsis thaliana |
AT5G48340:three_prime_UTR:3 | 320 | Chr5: 19592630-19592949 | Arabidopsis thaliana |
AT5G48340:three_prime_UTR:2 | 39 | Chr5: 19592488-19592526 | Arabidopsis thaliana |
AT5G48340:three_prime_UTR:5 | 446 | Chr5: 19592630-19593075 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...