External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G48090:CDS:4 | 131 | Chr5: 19485234-19485364 | Arabidopsis thaliana |
AT5G48090:CDS:5 | 100 | Chr5: 19485462-19485561 | Arabidopsis thaliana |
AT5G48090:CDS:6 | 99 | Chr5: 19485646-19485744 | Arabidopsis thaliana |
AT5G48090:CDS:7 | 247 | Chr5: 19485843-19486089 | Arabidopsis thaliana |
AT5G48090:CDS:8 | 93 | Chr5: 19486178-19486270 | Arabidopsis thaliana |
AT5G48090:CDS:9 | 253 | Chr5: 19486349-19486601 | Arabidopsis thaliana |
AT5G48090:CDS:10 | 148 | Chr5: 19486687-19486834 | Arabidopsis thaliana |
AT5G48090:CDS:11 | 99 | Chr5: 19486929-19487027 | Arabidopsis thaliana |
AT5G48090:CDS:12 | 87 | Chr5: 19487154-19487240 | Arabidopsis thaliana |
AT5G48090:CDS:13 | 42 | Chr5: 19487353-19487394 | Arabidopsis thaliana |
AT5G48090:CDS:14 | 111 | Chr5: 19487474-19487584 | Arabidopsis thaliana |
AT5G48090:CDS:15 | 72 | Chr5: 19487651-19487722 | Arabidopsis thaliana |
AT5G48090:CDS:16 | 119 | Chr5: 19487808-19487926 | Arabidopsis thaliana |
AT5G48090:CDS:17 | 61 | Chr5: 19487991-19488051 | Arabidopsis thaliana |
AT5G48090:CDS:18 | 249 | Chr5: 19488135-19488383 | Arabidopsis thaliana |
AT5G48090:CDS:1 | 33 | Chr5: 19484724-19484756 | Arabidopsis thaliana |
AT5G48090:CDS:2 | 51 | Chr5: 19485052-19485102 | Arabidopsis thaliana |
AT5G48090:CDS:3 | 170 | Chr5: 19485195-19485364 | Arabidopsis thaliana |
AT5G48090:CDS:5.1 | 100 | Chr5: 19485462-19485561 | Arabidopsis thaliana |
AT5G48090:CDS:6.1 | 99 | Chr5: 19485646-19485744 | Arabidopsis thaliana |
AT5G48090:CDS:7.1 | 247 | Chr5: 19485843-19486089 | Arabidopsis thaliana |
AT5G48090:CDS:8.1 | 93 | Chr5: 19486178-19486270 | Arabidopsis thaliana |
AT5G48090:CDS:9.1 | 253 | Chr5: 19486349-19486601 | Arabidopsis thaliana |
AT5G48090:CDS:10.1 | 148 | Chr5: 19486687-19486834 | Arabidopsis thaliana |
AT5G48090:CDS:11.1 | 99 | Chr5: 19486929-19487027 | Arabidopsis thaliana |
AT5G48090:CDS:12.1 | 87 | Chr5: 19487154-19487240 | Arabidopsis thaliana |
AT5G48090:CDS:13.1 | 42 | Chr5: 19487353-19487394 | Arabidopsis thaliana |
AT5G48090:CDS:14.1 | 111 | Chr5: 19487474-19487584 | Arabidopsis thaliana |
AT5G48090:CDS:15.1 | 72 | Chr5: 19487651-19487722 | Arabidopsis thaliana |
AT5G48090:CDS:16.1 | 119 | Chr5: 19487808-19487926 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G48090:exon:1 | 33 | Chr5: 19484015-19484047 | Arabidopsis thaliana |
AT5G48090:exon:2 | 427 | Chr5: 19484157-19484583 | Arabidopsis thaliana |
AT5G48090:exon:6 | 51 | Chr5: 19485052-19485102 | Arabidopsis thaliana |
AT5G48090:exon:3 | 419 | Chr5: 19484165-19484583 | Arabidopsis thaliana |
AT5G48090:exon:4 | 87 | Chr5: 19484670-19484756 | Arabidopsis thaliana |
AT5G48090:exon:5 | 185 | Chr5: 19484918-19485102 | Arabidopsis thaliana |
AT5G48090:exon:7 | 170 | Chr5: 19485195-19485364 | Arabidopsis thaliana |
AT5G48090:exon:8 | 100 | Chr5: 19485462-19485561 | Arabidopsis thaliana |
AT5G48090:exon:9 | 99 | Chr5: 19485646-19485744 | Arabidopsis thaliana |
AT5G48090:exon:10 | 247 | Chr5: 19485843-19486089 | Arabidopsis thaliana |
AT5G48090:exon:11 | 93 | Chr5: 19486178-19486270 | Arabidopsis thaliana |
AT5G48090:exon:12 | 253 | Chr5: 19486349-19486601 | Arabidopsis thaliana |
AT5G48090:exon:13 | 148 | Chr5: 19486687-19486834 | Arabidopsis thaliana |
AT5G48090:exon:14 | 99 | Chr5: 19486929-19487027 | Arabidopsis thaliana |
AT5G48090:exon:15 | 87 | Chr5: 19487154-19487240 | Arabidopsis thaliana |
AT5G48090:exon:16 | 42 | Chr5: 19487353-19487394 | Arabidopsis thaliana |
AT5G48090:exon:17 | 111 | Chr5: 19487474-19487584 | Arabidopsis thaliana |
AT5G48090:exon:18 | 72 | Chr5: 19487651-19487722 | Arabidopsis thaliana |
AT5G48090:exon:19 | 119 | Chr5: 19487808-19487926 | Arabidopsis thaliana |
AT5G48090:exon:20 | 61 | Chr5: 19487991-19488051 | Arabidopsis thaliana |
AT5G48090:exon:21 | 523 | Chr5: 19488135-19488657 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G48090:five_prime_UTR:1 | 33 | Chr5: 19484015-19484047 | Arabidopsis thaliana |
AT5G48090:five_prime_UTR:2 | 427 | Chr5: 19484157-19484583 | Arabidopsis thaliana |
AT5G48090:five_prime_UTR:4 | 54 | Chr5: 19484670-19484723 | Arabidopsis thaliana |
AT5G48090:five_prime_UTR:3 | 419 | Chr5: 19484165-19484583 | Arabidopsis thaliana |
AT5G48090:five_prime_UTR:5 | 87 | Chr5: 19484670-19484756 | Arabidopsis thaliana |
AT5G48090:five_prime_UTR:6 | 185 | Chr5: 19484918-19485102 | Arabidopsis thaliana |
AT5G48090:five_prime_UTR:7 | 39 | Chr5: 19485195-19485233 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G48090.2 | 2956 | Chr5: 19484015-19488657 |
AT5G48090.1 | 2781 | Chr5: 19484165-19488657 |
AT5G48090.3 | 2915 | Chr5: 19484165-19488657 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G48090:three_prime_UTR:1 | 274 | Chr5: 19488384-19488657 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...