External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 31, Exons: 18, Five Prime UTRs: 5, Gene: 1, mRNAs: 4, Three Prime UTRs: 5, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47960:CDS:1 | 227 | Chr5: 19422247-19422473 | Arabidopsis thaliana |
AT5G47970:CDS:1 | 38 | Chr5: 19423420-19423457 | Arabidopsis thaliana |
AT5G47970:CDS:2 | 127 | Chr5: 19423558-19423684 | Arabidopsis thaliana |
AT5G47970:CDS:3 | 128 | Chr5: 19423793-19423920 | Arabidopsis thaliana |
AT5G47970:CDS:4 | 173 | Chr5: 19424015-19424187 | Arabidopsis thaliana |
AT5G47970:CDS:5 | 118 | Chr5: 19424319-19424436 | Arabidopsis thaliana |
AT5G47970:CDS:6 | 82 | Chr5: 19424559-19424640 | Arabidopsis thaliana |
AT5G47970:CDS:7 | 62 | Chr5: 19424732-19424793 | Arabidopsis thaliana |
AT5G47970:CDS:8 | 73 | Chr5: 19424889-19424961 | Arabidopsis thaliana |
AT5G47970:CDS:10 | 84 | Chr5: 19425059-19425142 | Arabidopsis thaliana |
AT5G47970:CDS:11 | 81 | Chr5: 19425224-19425304 | Arabidopsis thaliana |
AT5G47970:CDS:12 | 198 | Chr5: 19425388-19425585 | Arabidopsis thaliana |
AT5G47970:CDS:1.1 | 38 | Chr5: 19423420-19423457 | Arabidopsis thaliana |
AT5G47970:CDS:2.1 | 127 | Chr5: 19423558-19423684 | Arabidopsis thaliana |
AT5G47970:CDS:3.1 | 128 | Chr5: 19423793-19423920 | Arabidopsis thaliana |
AT5G47970:CDS:4.1 | 173 | Chr5: 19424015-19424187 | Arabidopsis thaliana |
AT5G47970:CDS:5.1 | 118 | Chr5: 19424319-19424436 | Arabidopsis thaliana |
AT5G47970:CDS:6.1 | 82 | Chr5: 19424559-19424640 | Arabidopsis thaliana |
AT5G47970:CDS:7.1 | 62 | Chr5: 19424732-19424793 | Arabidopsis thaliana |
AT5G47970:CDS:9 | 103 | Chr5: 19424889-19424991 | Arabidopsis thaliana |
AT5G47970:CDS:1.2 | 38 | Chr5: 19423420-19423457 | Arabidopsis thaliana |
AT5G47970:CDS:2.2 | 127 | Chr5: 19423558-19423684 | Arabidopsis thaliana |
AT5G47970:CDS:3.2 | 128 | Chr5: 19423793-19423920 | Arabidopsis thaliana |
AT5G47970:CDS:4.2 | 173 | Chr5: 19424015-19424187 | Arabidopsis thaliana |
AT5G47970:CDS:5.2 | 118 | Chr5: 19424319-19424436 | Arabidopsis thaliana |
AT5G47970:CDS:6.2 | 82 | Chr5: 19424559-19424640 | Arabidopsis thaliana |
AT5G47970:CDS:7.2 | 62 | Chr5: 19424732-19424793 | Arabidopsis thaliana |
AT5G47970:CDS:8.1 | 73 | Chr5: 19424889-19424961 | Arabidopsis thaliana |
AT5G47970:CDS:10.1 | 84 | Chr5: 19425059-19425142 | Arabidopsis thaliana |
AT5G47970:CDS:11.1 | 81 | Chr5: 19425224-19425304 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47960:exon:1 | 287 | Chr5: 19422247-19422533 | Arabidopsis thaliana |
AT5G47970:exon:1 | 641 | Chr5: 19422203-19422843 | Arabidopsis thaliana |
AT5G47970:exon:15 | 424 | Chr5: 19425388-19425811 | Arabidopsis thaliana |
AT5G47970:exon:12 | 254 | Chr5: 19424889-19425142 | Arabidopsis thaliana |
AT5G47970:exon:16 | 428 | Chr5: 19425388-19425815 | Arabidopsis thaliana |
AT5G47970:exon:2 | 86 | Chr5: 19422564-19422649 | Arabidopsis thaliana |
AT5G47970:exon:3 | 116 | Chr5: 19422728-19422843 | Arabidopsis thaliana |
AT5G47970:exon:4 | 77 | Chr5: 19423381-19423457 | Arabidopsis thaliana |
AT5G47970:exon:5 | 127 | Chr5: 19423558-19423684 | Arabidopsis thaliana |
AT5G47970:exon:6 | 128 | Chr5: 19423793-19423920 | Arabidopsis thaliana |
AT5G47970:exon:7 | 173 | Chr5: 19424015-19424187 | Arabidopsis thaliana |
AT5G47970:exon:8 | 118 | Chr5: 19424319-19424436 | Arabidopsis thaliana |
AT5G47970:exon:9 | 82 | Chr5: 19424559-19424640 | Arabidopsis thaliana |
AT5G47970:exon:10 | 62 | Chr5: 19424732-19424793 | Arabidopsis thaliana |
AT5G47970:exon:11 | 73 | Chr5: 19424889-19424961 | Arabidopsis thaliana |
AT5G47970:exon:13 | 84 | Chr5: 19425059-19425142 | Arabidopsis thaliana |
AT5G47970:exon:14 | 81 | Chr5: 19425224-19425304 | Arabidopsis thaliana |
AT5G47970:exon:17 | 485 | Chr5: 19425388-19425872 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47960:five_prime_UTR:1 | 60 | Chr5: 19422474-19422533 | Arabidopsis thaliana |
AT5G47970:five_prime_UTR:1 | 641 | Chr5: 19422203-19422843 | Arabidopsis thaliana |
AT5G47970:five_prime_UTR:2 | 86 | Chr5: 19422564-19422649 | Arabidopsis thaliana |
AT5G47970:five_prime_UTR:3 | 116 | Chr5: 19422728-19422843 | Arabidopsis thaliana |
AT5G47970:five_prime_UTR:4 | 39 | Chr5: 19423381-19423419 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G47960 | locus:2152753 | RABA4C | RAB GTPase homolog A4C | 1194 | Chr5: 19421340-19422533 | A. thaliana | RAB GTPase homolog A4C;(source:Araport11) | Encodes a small molecular weight g-protein. | RAB GTPase homolog A4C | ATRABA4C, RABA4C, SMG1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G47960.1 | 925 | Chr5: 19421340-19422533 |
AT5G47970.1 | 2070 | Chr5: 19422203-19425811 |
AT5G47970.3 | 1732 | Chr5: 19422564-19425815 |
AT5G47970.2 | 1692 | Chr5: 19422564-19425872 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47970:three_prime_UTR:4 | 226 | Chr5: 19425586-19425811 | Arabidopsis thaliana |
AT5G47970:three_prime_UTR:1 | 151 | Chr5: 19424992-19425142 | Arabidopsis thaliana |
AT5G47970:three_prime_UTR:2 | 81 | Chr5: 19425224-19425304 | Arabidopsis thaliana |
AT5G47970:three_prime_UTR:3 | 428 | Chr5: 19425388-19425815 | Arabidopsis thaliana |
AT5G47970:three_prime_UTR:5 | 287 | Chr5: 19425586-19425872 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE69890 | 136 | Chr5: 19425676-19425811 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE69890:transposon_fragment:1 | 136 | Chr5: 19425676-19425811 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
Q9FI41_ARATH | function | Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. |
Q9FI41_ARATH | similarity | Belongs to the dus family. |
Function
Gene Ontology
cellular component | |
---|---|
cytosol | ECO |
nucleus | ECO |
phragmoplast | ECO |
cytoplasm | ECO |
molecular function | |
flavin adenine dinucleotide binding | ECO |
tRNA dihydrouridine synthase activity | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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