External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 40, Exons: 19, Five Prime UTRs: 6, Genes: 2, mRNAs: 9, Three Prime UTRs: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47730:CDS:12 | 333 | Chr5: 19334592-19334924 | Arabidopsis thaliana |
AT5G47730:CDS:11 | 81 | Chr5: 19335005-19335085 | Arabidopsis thaliana |
AT5G47730:CDS:10 | 102 | Chr5: 19335171-19335272 | Arabidopsis thaliana |
AT5G47730:CDS:9 | 96 | Chr5: 19335395-19335490 | Arabidopsis thaliana |
AT5G47730:CDS:8 | 60 | Chr5: 19335572-19335631 | Arabidopsis thaliana |
AT5G47730:CDS:7 | 54 | Chr5: 19335716-19335769 | Arabidopsis thaliana |
AT5G47730:CDS:6 | 78 | Chr5: 19335853-19335930 | Arabidopsis thaliana |
AT5G47730:CDS:5 | 54 | Chr5: 19336016-19336069 | Arabidopsis thaliana |
AT5G47730:CDS:4 | 3 | Chr5: 19336156-19336158 | Arabidopsis thaliana |
AT5G47730:CDS:12.1 | 333 | Chr5: 19334592-19334924 | Arabidopsis thaliana |
AT5G47730:CDS:11.1 | 81 | Chr5: 19335005-19335085 | Arabidopsis thaliana |
AT5G47730:CDS:10.1 | 102 | Chr5: 19335171-19335272 | Arabidopsis thaliana |
AT5G47730:CDS:9.1 | 96 | Chr5: 19335395-19335490 | Arabidopsis thaliana |
AT5G47730:CDS:8.1 | 60 | Chr5: 19335572-19335631 | Arabidopsis thaliana |
AT5G47730:CDS:7.1 | 54 | Chr5: 19335716-19335769 | Arabidopsis thaliana |
AT5G47730:CDS:6.1 | 78 | Chr5: 19335853-19335930 | Arabidopsis thaliana |
AT5G47730:CDS:5.1 | 54 | Chr5: 19336016-19336069 | Arabidopsis thaliana |
AT5G47730:CDS:4.1 | 3 | Chr5: 19336156-19336158 | Arabidopsis thaliana |
AT5G47730:CDS:12.2 | 333 | Chr5: 19334592-19334924 | Arabidopsis thaliana |
AT5G47730:CDS:11.2 | 81 | Chr5: 19335005-19335085 | Arabidopsis thaliana |
AT5G47730:CDS:10.2 | 102 | Chr5: 19335171-19335272 | Arabidopsis thaliana |
AT5G47730:CDS:9.2 | 96 | Chr5: 19335395-19335490 | Arabidopsis thaliana |
AT5G47730:CDS:8.2 | 60 | Chr5: 19335572-19335631 | Arabidopsis thaliana |
AT5G47730:CDS:7.2 | 54 | Chr5: 19335716-19335769 | Arabidopsis thaliana |
AT5G47730:CDS:6.2 | 78 | Chr5: 19335853-19335930 | Arabidopsis thaliana |
AT5G47730:CDS:5.2 | 54 | Chr5: 19336016-19336069 | Arabidopsis thaliana |
AT5G47730:CDS:3 | 84 | Chr5: 19336156-19336239 | Arabidopsis thaliana |
AT5G47730:CDS:2 | 29 | Chr5: 19336448-19336476 | Arabidopsis thaliana |
AT5G47730:CDS:1 | 55 | Chr5: 19336564-19336618 | Arabidopsis thaliana |
AT5G47730:CDS:12.3 | 333 | Chr5: 19334592-19334924 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47720:exon:17 | 166 | Chr5: 19334112-19334277 | Arabidopsis thaliana |
AT5G47720:exon:18 | 316 | Chr5: 19334112-19334427 | Arabidopsis thaliana |
AT5G47730:exon:6 | 38 | Chr5: 19336353-19336390 | Arabidopsis thaliana |
AT5G47730:exon:4 | 700 | Chr5: 19336448-19337147 | Arabidopsis thaliana |
AT5G47730:exon:16 | 675 | Chr5: 19334250-19334924 | Arabidopsis thaliana |
AT5G47730:exon:2 | 585 | Chr5: 19336564-19337148 | Arabidopsis thaliana |
AT5G47730:exon:15 | 333 | Chr5: 19334592-19334924 | Arabidopsis thaliana |
AT5G47730:exon:14 | 81 | Chr5: 19335005-19335085 | Arabidopsis thaliana |
AT5G47730:exon:13 | 102 | Chr5: 19335171-19335272 | Arabidopsis thaliana |
AT5G47730:exon:12 | 96 | Chr5: 19335395-19335490 | Arabidopsis thaliana |
AT5G47730:exon:11 | 60 | Chr5: 19335572-19335631 | Arabidopsis thaliana |
AT5G47730:exon:10 | 54 | Chr5: 19335716-19335769 | Arabidopsis thaliana |
AT5G47730:exon:9 | 78 | Chr5: 19335853-19335930 | Arabidopsis thaliana |
AT5G47730:exon:8 | 54 | Chr5: 19336016-19336069 | Arabidopsis thaliana |
AT5G47730:exon:7 | 84 | Chr5: 19336156-19336239 | Arabidopsis thaliana |
AT5G47730:exon:5 | 29 | Chr5: 19336448-19336476 | Arabidopsis thaliana |
AT5G47730:exon:3 | 72 | Chr5: 19336564-19336635 | Arabidopsis thaliana |
AT5G47730:exon:1 | 331 | Chr5: 19336817-19337147 | Arabidopsis thaliana |
AT5G07025:exon:1 | 412 | Chr5: 19336704-19337115 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47730:five_prime_UTR:5 | 38 | Chr5: 19336353-19336390 | Arabidopsis thaliana |
AT5G47730:five_prime_UTR:6 | 81 | Chr5: 19336159-19336239 | Arabidopsis thaliana |
AT5G47730:five_prime_UTR:4 | 700 | Chr5: 19336448-19337147 | Arabidopsis thaliana |
AT5G47730:five_prime_UTR:2 | 530 | Chr5: 19336619-19337148 | Arabidopsis thaliana |
AT5G47730:five_prime_UTR:3 | 17 | Chr5: 19336619-19336635 | Arabidopsis thaliana |
AT5G47730:five_prime_UTR:1 | 331 | Chr5: 19336817-19337147 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G47720 | locus:2160887 | AACT1 | acetoacetyl-CoA thiolase 1 | 2881 | Chr5: 19331547-19334427 | A. thaliana | Thiolase family protein;(source:Araport11) | Encodes a functional acetoacetyl-CoA thiolase that is functionally redundant with AACT2. Loss-of-function mutants show no apparent growth phenotypes. | Thiolase family protein | AACT1 |
AT5G07025 | AT5G07025 | 412 | Chr5: 19336704-19337115 | A. thaliana | Natural antisense transcript overlaps with AT5G47730;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G47720.2 | 1511 | Chr5: 19331547-19334277 |
AT5G47720.3 | 1683 | Chr5: 19331547-19334427 |
AT5G47720.4 | 1516 | Chr5: 19331626-19334277 |
AT5G47720.1 | 1688 | Chr5: 19331626-19334427 |
AT5G47720.5 | 1782 | Chr5: 19331657-19334427 |
AT5G47730.3 | 1322 | Chr5: 19334250-19336390 |
AT5G47730.2 | 1984 | Chr5: 19334250-19337147 |
AT5G47730.1 | 1898 | Chr5: 19334250-19337148 |
AT5G47730.4 | 1374 | Chr5: 19334592-19337147 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47720:three_prime_UTR:3 | 132 | Chr5: 19334146-19334277 | Arabidopsis thaliana |
AT5G47720:three_prime_UTR:2 | 316 | Chr5: 19334112-19334427 | Arabidopsis thaliana |
AT5G47730:three_prime_UTR:1 | 342 | Chr5: 19334250-19334591 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...