External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47490:CDS:1 | 1629 | Chr5: 19264675-19266303 | Arabidopsis thaliana |
AT5G47490:CDS:2 | 324 | Chr5: 19266456-19266779 | Arabidopsis thaliana |
AT5G47490:CDS:3 | 126 | Chr5: 19266875-19267000 | Arabidopsis thaliana |
AT5G47490:CDS:4 | 123 | Chr5: 19267100-19267222 | Arabidopsis thaliana |
AT5G47490:CDS:5 | 171 | Chr5: 19267308-19267478 | Arabidopsis thaliana |
AT5G47490:CDS:6 | 126 | Chr5: 19267751-19267876 | Arabidopsis thaliana |
AT5G47490:CDS:7 | 135 | Chr5: 19267952-19268086 | Arabidopsis thaliana |
AT5G47490:CDS:8 | 128 | Chr5: 19268287-19268414 | Arabidopsis thaliana |
AT5G47490:CDS:9 | 109 | Chr5: 19268500-19268608 | Arabidopsis thaliana |
AT5G47490:CDS:11 | 321 | Chr5: 19268815-19269135 | Arabidopsis thaliana |
AT5G47490:CDS:13 | 150 | Chr5: 19269211-19269360 | Arabidopsis thaliana |
AT5G47490:CDS:14 | 287 | Chr5: 19269439-19269725 | Arabidopsis thaliana |
AT5G47490:CDS:15 | 457 | Chr5: 19270031-19270487 | Arabidopsis thaliana |
AT5G47490:CDS:1.1 | 1629 | Chr5: 19264675-19266303 | Arabidopsis thaliana |
AT5G47490:CDS:2.1 | 324 | Chr5: 19266456-19266779 | Arabidopsis thaliana |
AT5G47490:CDS:3.1 | 126 | Chr5: 19266875-19267000 | Arabidopsis thaliana |
AT5G47490:CDS:4.1 | 123 | Chr5: 19267100-19267222 | Arabidopsis thaliana |
AT5G47490:CDS:5.1 | 171 | Chr5: 19267308-19267478 | Arabidopsis thaliana |
AT5G47490:CDS:6.1 | 126 | Chr5: 19267751-19267876 | Arabidopsis thaliana |
AT5G47490:CDS:7.1 | 135 | Chr5: 19267952-19268086 | Arabidopsis thaliana |
AT5G47490:CDS:8.1 | 128 | Chr5: 19268287-19268414 | Arabidopsis thaliana |
AT5G47490:CDS:9.1 | 109 | Chr5: 19268500-19268608 | Arabidopsis thaliana |
AT5G47490:CDS:11.1 | 321 | Chr5: 19268815-19269135 | Arabidopsis thaliana |
AT5G47490:CDS:13.1 | 150 | Chr5: 19269211-19269360 | Arabidopsis thaliana |
AT5G47490:CDS:14.1 | 287 | Chr5: 19269439-19269725 | Arabidopsis thaliana |
AT5G47490:CDS:15.1 | 457 | Chr5: 19270031-19270487 | Arabidopsis thaliana |
AT5G47490:CDS:1.2 | 1629 | Chr5: 19264675-19266303 | Arabidopsis thaliana |
AT5G47490:CDS:2.2 | 324 | Chr5: 19266456-19266779 | Arabidopsis thaliana |
AT5G47490:CDS:3.2 | 126 | Chr5: 19266875-19267000 | Arabidopsis thaliana |
AT5G47490:CDS:4.2 | 123 | Chr5: 19267100-19267222 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47490:exon:1 | 2478 | Chr5: 19263826-19266303 | Arabidopsis thaliana |
AT5G47490:exon:19 | 869 | Chr5: 19270031-19270899 | Arabidopsis thaliana |
AT5G47490:exon:2 | 388 | Chr5: 19263893-19264280 | Arabidopsis thaliana |
AT5G47490:exon:4 | 1942 | Chr5: 19264362-19266303 | Arabidopsis thaliana |
AT5G47490:exon:14 | 321 | Chr5: 19268815-19269135 | Arabidopsis thaliana |
AT5G47490:exon:17 | 770 | Chr5: 19270031-19270800 | Arabidopsis thaliana |
AT5G47490:exon:3 | 2369 | Chr5: 19263935-19266303 | Arabidopsis thaliana |
AT5G47490:exon:5 | 324 | Chr5: 19266456-19266779 | Arabidopsis thaliana |
AT5G47490:exon:6 | 126 | Chr5: 19266875-19267000 | Arabidopsis thaliana |
AT5G47490:exon:7 | 123 | Chr5: 19267100-19267222 | Arabidopsis thaliana |
AT5G47490:exon:8 | 171 | Chr5: 19267308-19267478 | Arabidopsis thaliana |
AT5G47490:exon:9 | 126 | Chr5: 19267751-19267876 | Arabidopsis thaliana |
AT5G47490:exon:10 | 135 | Chr5: 19267952-19268086 | Arabidopsis thaliana |
AT5G47490:exon:11 | 128 | Chr5: 19268287-19268414 | Arabidopsis thaliana |
AT5G47490:exon:12 | 109 | Chr5: 19268500-19268608 | Arabidopsis thaliana |
AT5G47490:exon:13 | 304 | Chr5: 19268815-19269118 | Arabidopsis thaliana |
AT5G47490:exon:15 | 150 | Chr5: 19269211-19269360 | Arabidopsis thaliana |
AT5G47490:exon:16 | 287 | Chr5: 19269439-19269725 | Arabidopsis thaliana |
AT5G47490:exon:18 | 798 | Chr5: 19270031-19270828 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47490:five_prime_UTR:1 | 849 | Chr5: 19263826-19264674 | Arabidopsis thaliana |
AT5G47490:five_prime_UTR:2 | 388 | Chr5: 19263893-19264280 | Arabidopsis thaliana |
AT5G47490:five_prime_UTR:4 | 313 | Chr5: 19264362-19264674 | Arabidopsis thaliana |
AT5G47490:five_prime_UTR:3 | 740 | Chr5: 19263935-19264674 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G47490.2 | 5347 | Chr5: 19263826-19270899 |
AT5G47490.1 | 5100 | Chr5: 19263893-19270800 |
AT5G47490.3 | 5150 | Chr5: 19263935-19270828 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47490:three_prime_UTR:5 | 412 | Chr5: 19270488-19270899 | Arabidopsis thaliana |
AT5G47490:three_prime_UTR:4 | 313 | Chr5: 19270488-19270800 | Arabidopsis thaliana |
AT5G47490:three_prime_UTR:1 | 139 | Chr5: 19269222-19269360 | Arabidopsis thaliana |
AT5G47490:three_prime_UTR:2 | 287 | Chr5: 19269439-19269725 | Arabidopsis thaliana |
AT5G47490:three_prime_UTR:3 | 798 | Chr5: 19270031-19270828 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
SC16B_ARATH | function | Required for protein transport from the endoplasmic reticulum to the Golgi apparatus. |
SC16B_ARATH A0A1P8B9X0_ARATH | similarity | Belongs to the SEC16 family. |
Function
Gene Ontology
cellular component | |
---|---|
endoplasmic reticulum exit site | ECO |
Golgi apparatus | ECO |
molecular function | |
No terms in this category. | |
biological process | |
COPII vesicle coating | ECO |
protein transport | ECO |
autophagy | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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