External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47380:CDS:15 | 336 | Chr5: 19221608-19221943 | Arabidopsis thaliana |
AT5G47380:CDS:11 | 135 | Chr5: 19222084-19222218 | Arabidopsis thaliana |
AT5G47380:CDS:10 | 87 | Chr5: 19222288-19222374 | Arabidopsis thaliana |
AT5G47380:CDS:9 | 60 | Chr5: 19222465-19222524 | Arabidopsis thaliana |
AT5G47380:CDS:8 | 100 | Chr5: 19222612-19222711 | Arabidopsis thaliana |
AT5G47380:CDS:7 | 323 | Chr5: 19222791-19223113 | Arabidopsis thaliana |
AT5G47380:CDS:6 | 354 | Chr5: 19223202-19223555 | Arabidopsis thaliana |
AT5G47380:CDS:5 | 117 | Chr5: 19223645-19223761 | Arabidopsis thaliana |
AT5G47380:CDS:4 | 111 | Chr5: 19223865-19223975 | Arabidopsis thaliana |
AT5G47380:CDS:2 | 76 | Chr5: 19224052-19224127 | Arabidopsis thaliana |
AT5G47380:CDS:1 | 98 | Chr5: 19224374-19224471 | Arabidopsis thaliana |
AT5G47380:CDS:13 | 42 | Chr5: 19221974-19222015 | Arabidopsis thaliana |
AT5G47380:CDS:11.1 | 135 | Chr5: 19222084-19222218 | Arabidopsis thaliana |
AT5G47380:CDS:10.1 | 87 | Chr5: 19222288-19222374 | Arabidopsis thaliana |
AT5G47380:CDS:9.1 | 60 | Chr5: 19222465-19222524 | Arabidopsis thaliana |
AT5G47380:CDS:8.1 | 100 | Chr5: 19222612-19222711 | Arabidopsis thaliana |
AT5G47380:CDS:7.1 | 323 | Chr5: 19222791-19223113 | Arabidopsis thaliana |
AT5G47380:CDS:6.1 | 354 | Chr5: 19223202-19223555 | Arabidopsis thaliana |
AT5G47380:CDS:5.1 | 117 | Chr5: 19223645-19223761 | Arabidopsis thaliana |
AT5G47380:CDS:4.1 | 111 | Chr5: 19223865-19223975 | Arabidopsis thaliana |
AT5G47380:CDS:2.1 | 76 | Chr5: 19224052-19224127 | Arabidopsis thaliana |
AT5G47380:CDS:1.1 | 98 | Chr5: 19224374-19224471 | Arabidopsis thaliana |
AT5G47380:CDS:12 | 186 | Chr5: 19222033-19222218 | Arabidopsis thaliana |
AT5G47380:CDS:10.2 | 87 | Chr5: 19222288-19222374 | Arabidopsis thaliana |
AT5G47380:CDS:9.2 | 60 | Chr5: 19222465-19222524 | Arabidopsis thaliana |
AT5G47380:CDS:8.2 | 100 | Chr5: 19222612-19222711 | Arabidopsis thaliana |
AT5G47380:CDS:7.2 | 323 | Chr5: 19222791-19223113 | Arabidopsis thaliana |
AT5G47380:CDS:6.2 | 354 | Chr5: 19223202-19223555 | Arabidopsis thaliana |
AT5G47380:CDS:5.2 | 117 | Chr5: 19223645-19223761 | Arabidopsis thaliana |
AT5G47380:CDS:4.2 | 111 | Chr5: 19223865-19223975 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47380:exon:18 | 670 | Chr5: 19221274-19221943 | Arabidopsis thaliana |
AT5G47380:exon:17 | 742 | Chr5: 19221274-19222015 | Arabidopsis thaliana |
AT5G47380:exon:16 | 945 | Chr5: 19221274-19222218 | Arabidopsis thaliana |
AT5G47380:exon:1 | 279 | Chr5: 19224374-19224652 | Arabidopsis thaliana |
AT5G47380:exon:15 | 555 | Chr5: 19221389-19221943 | Arabidopsis thaliana |
AT5G47380:exon:3 | 170 | Chr5: 19224052-19224221 | Arabidopsis thaliana |
AT5G47380:exon:14 | 70 | Chr5: 19221472-19221541 | Arabidopsis thaliana |
AT5G47380:exon:13 | 326 | Chr5: 19221618-19221943 | Arabidopsis thaliana |
AT5G47380:exon:12 | 135 | Chr5: 19222084-19222218 | Arabidopsis thaliana |
AT5G47380:exon:11 | 87 | Chr5: 19222288-19222374 | Arabidopsis thaliana |
AT5G47380:exon:10 | 60 | Chr5: 19222465-19222524 | Arabidopsis thaliana |
AT5G47380:exon:9 | 100 | Chr5: 19222612-19222711 | Arabidopsis thaliana |
AT5G47380:exon:8 | 323 | Chr5: 19222791-19223113 | Arabidopsis thaliana |
AT5G47380:exon:7 | 354 | Chr5: 19223202-19223555 | Arabidopsis thaliana |
AT5G47380:exon:6 | 117 | Chr5: 19223645-19223761 | Arabidopsis thaliana |
AT5G47380:exon:5 | 111 | Chr5: 19223865-19223975 | Arabidopsis thaliana |
AT5G47380:exon:4 | 76 | Chr5: 19224052-19224127 | Arabidopsis thaliana |
AT5G47380:exon:2 | 218 | Chr5: 19224374-19224591 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47380:five_prime_UTR:1 | 181 | Chr5: 19224472-19224652 | Arabidopsis thaliana |
AT5G47380:five_prime_UTR:3 | 164 | Chr5: 19224058-19224221 | Arabidopsis thaliana |
AT5G47380:five_prime_UTR:2 | 120 | Chr5: 19224472-19224591 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G47380.4 | 2312 | Chr5: 19221274-19224652 |
AT5G47380.3 | 2384 | Chr5: 19221274-19224652 |
AT5G47380.2 | 2452 | Chr5: 19221274-19224652 |
AT5G47380.5 | 2012 | Chr5: 19221389-19224221 |
AT5G47380.1 | 1977 | Chr5: 19221472-19224591 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47380:three_prime_UTR:4 | 334 | Chr5: 19221274-19221607 | Arabidopsis thaliana |
AT5G47380:three_prime_UTR:3 | 700 | Chr5: 19221274-19221973 | Arabidopsis thaliana |
AT5G47380:three_prime_UTR:2 | 759 | Chr5: 19221274-19222032 | Arabidopsis thaliana |
AT5G47380:three_prime_UTR:1 | 219 | Chr5: 19221389-19221607 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...