External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G46400:CDS:1 | 79 | Chr5: 18820032-18820110 | Arabidopsis thaliana |
AT5G46400:CDS:2 | 104 | Chr5: 18820229-18820332 | Arabidopsis thaliana |
AT5G46400:CDS:3 | 230 | Chr5: 18820460-18820689 | Arabidopsis thaliana |
AT5G46400:CDS:4 | 168 | Chr5: 18820944-18821111 | Arabidopsis thaliana |
AT5G46400:CDS:5 | 367 | Chr5: 18821228-18821594 | Arabidopsis thaliana |
AT5G46400:CDS:7 | 144 | Chr5: 18821684-18821827 | Arabidopsis thaliana |
AT5G46400:CDS:8 | 153 | Chr5: 18821933-18822085 | Arabidopsis thaliana |
AT5G46400:CDS:9 | 120 | Chr5: 18822168-18822287 | Arabidopsis thaliana |
AT5G46400:CDS:10 | 81 | Chr5: 18822451-18822531 | Arabidopsis thaliana |
AT5G46400:CDS:11 | 150 | Chr5: 18822677-18822826 | Arabidopsis thaliana |
AT5G46400:CDS:12 | 1449 | Chr5: 18822920-18824368 | Arabidopsis thaliana |
AT5G46400:CDS:13 | 66 | Chr5: 18824457-18824522 | Arabidopsis thaliana |
AT5G46400:CDS:6 | 288 | Chr5: 18821307-18821594 | Arabidopsis thaliana |
AT5G46400:CDS:7.1 | 144 | Chr5: 18821684-18821827 | Arabidopsis thaliana |
AT5G46400:CDS:8.1 | 153 | Chr5: 18821933-18822085 | Arabidopsis thaliana |
AT5G46400:CDS:9.1 | 120 | Chr5: 18822168-18822287 | Arabidopsis thaliana |
AT5G46400:CDS:10.1 | 81 | Chr5: 18822451-18822531 | Arabidopsis thaliana |
AT5G46400:CDS:11.1 | 150 | Chr5: 18822677-18822826 | Arabidopsis thaliana |
AT5G46400:CDS:12.1 | 1449 | Chr5: 18822920-18824368 | Arabidopsis thaliana |
AT5G46400:CDS:13.1 | 66 | Chr5: 18824457-18824522 | Arabidopsis thaliana |
AT5G46400:CDS:6.1 | 288 | Chr5: 18821307-18821594 | Arabidopsis thaliana |
AT5G46400:CDS:7.2 | 144 | Chr5: 18821684-18821827 | Arabidopsis thaliana |
AT5G46400:CDS:8.2 | 153 | Chr5: 18821933-18822085 | Arabidopsis thaliana |
AT5G46400:CDS:9.2 | 120 | Chr5: 18822168-18822287 | Arabidopsis thaliana |
AT5G46400:CDS:10.2 | 81 | Chr5: 18822451-18822531 | Arabidopsis thaliana |
AT5G46400:CDS:11.2 | 150 | Chr5: 18822677-18822826 | Arabidopsis thaliana |
AT5G46400:CDS:12.2 | 1449 | Chr5: 18822920-18824368 | Arabidopsis thaliana |
AT5G46400:CDS:13.2 | 66 | Chr5: 18824457-18824522 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G46400:exon:1 | 178 | Chr5: 18819933-18820110 | Arabidopsis thaliana |
AT5G46400:exon:2 | 104 | Chr5: 18820229-18820332 | Arabidopsis thaliana |
AT5G46400:exon:4 | 230 | Chr5: 18820460-18820689 | Arabidopsis thaliana |
AT5G46400:exon:3 | 253 | Chr5: 18820437-18820689 | Arabidopsis thaliana |
AT5G46400:exon:5 | 168 | Chr5: 18820944-18821111 | Arabidopsis thaliana |
AT5G46400:exon:7 | 367 | Chr5: 18821228-18821594 | Arabidopsis thaliana |
AT5G46400:exon:14 | 286 | Chr5: 18824457-18824742 | Arabidopsis thaliana |
AT5G46400:exon:6 | 410 | Chr5: 18821185-18821594 | Arabidopsis thaliana |
AT5G46400:exon:8 | 144 | Chr5: 18821684-18821827 | Arabidopsis thaliana |
AT5G46400:exon:9 | 153 | Chr5: 18821933-18822085 | Arabidopsis thaliana |
AT5G46400:exon:10 | 120 | Chr5: 18822168-18822287 | Arabidopsis thaliana |
AT5G46400:exon:11 | 81 | Chr5: 18822451-18822531 | Arabidopsis thaliana |
AT5G46400:exon:12 | 150 | Chr5: 18822677-18822826 | Arabidopsis thaliana |
AT5G46400:exon:13 | 1449 | Chr5: 18822920-18824368 | Arabidopsis thaliana |
AT5G46400:exon:15 | 326 | Chr5: 18824457-18824782 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G46400:five_prime_UTR:1 | 99 | Chr5: 18819933-18820031 | Arabidopsis thaliana |
AT5G46400:five_prime_UTR:2 | 253 | Chr5: 18820437-18820689 | Arabidopsis thaliana |
AT5G46400:five_prime_UTR:3 | 168 | Chr5: 18820944-18821111 | Arabidopsis thaliana |
AT5G46400:five_prime_UTR:5 | 79 | Chr5: 18821228-18821306 | Arabidopsis thaliana |
AT5G46400:five_prime_UTR:4 | 122 | Chr5: 18821185-18821306 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G46400.1 | 3470 | Chr5: 18819933-18824782 |
AT5G46400.2 | 3171 | Chr5: 18820437-18824742 |
AT5G46400.3 | 2833 | Chr5: 18821185-18824782 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G46400:three_prime_UTR:1 | 220 | Chr5: 18824523-18824742 | Arabidopsis thaliana |
AT5G46400:three_prime_UTR:2 | 260 | Chr5: 18824523-18824782 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
PR39B_ARATH | function | Involved in pre-mRNA splicing. |
PR39B_ARATH | similarity | Belongs to the PRP39 family. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
No terms in this category. | |
biological process | |
RNA splicing | ECO |
mRNA processing | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...