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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 47, Exons: 18, Five Prime UTRs: 4, Gene: 1, mRNAs: 4, tRNA: 1, Three Prime UTRs: 3, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G46110:CDS:3 | 5 | Chr5: 18698019-18698023 | Arabidopsis thaliana |
AT5G46110:CDS:4 | 66 | Chr5: 18698149-18698214 | Arabidopsis thaliana |
AT5G46110:CDS:5 | 79 | Chr5: 18698510-18698588 | Arabidopsis thaliana |
AT5G46110:CDS:6 | 121 | Chr5: 18698812-18698932 | Arabidopsis thaliana |
AT5G46110:CDS:7 | 96 | Chr5: 18699018-18699113 | Arabidopsis thaliana |
AT5G46110:CDS:8 | 113 | Chr5: 18699188-18699300 | Arabidopsis thaliana |
AT5G46110:CDS:10 | 78 | Chr5: 18699385-18699462 | Arabidopsis thaliana |
AT5G46110:CDS:11 | 117 | Chr5: 18699562-18699678 | Arabidopsis thaliana |
AT5G46110:CDS:12 | 100 | Chr5: 18699764-18699863 | Arabidopsis thaliana |
AT5G46110:CDS:13 | 101 | Chr5: 18699959-18700059 | Arabidopsis thaliana |
AT5G46110:CDS:15 | 18 | Chr5: 18700195-18700212 | Arabidopsis thaliana |
AT5G46110:CDS:1 | 278 | Chr5: 18697606-18697883 | Arabidopsis thaliana |
AT5G46110:CDS:2 | 66 | Chr5: 18697958-18698023 | Arabidopsis thaliana |
AT5G46110:CDS:4.1 | 66 | Chr5: 18698149-18698214 | Arabidopsis thaliana |
AT5G46110:CDS:5.1 | 79 | Chr5: 18698510-18698588 | Arabidopsis thaliana |
AT5G46110:CDS:6.1 | 121 | Chr5: 18698812-18698932 | Arabidopsis thaliana |
AT5G46110:CDS:7.1 | 96 | Chr5: 18699018-18699113 | Arabidopsis thaliana |
AT5G46110:CDS:8.1 | 113 | Chr5: 18699188-18699300 | Arabidopsis thaliana |
AT5G46110:CDS:10.1 | 78 | Chr5: 18699385-18699462 | Arabidopsis thaliana |
AT5G46110:CDS:11.1 | 117 | Chr5: 18699562-18699678 | Arabidopsis thaliana |
AT5G46110:CDS:12.1 | 100 | Chr5: 18699764-18699863 | Arabidopsis thaliana |
AT5G46110:CDS:13.1 | 101 | Chr5: 18699959-18700059 | Arabidopsis thaliana |
AT5G46110:CDS:15.1 | 18 | Chr5: 18700195-18700212 | Arabidopsis thaliana |
AT5G46110:CDS:1.1 | 278 | Chr5: 18697606-18697883 | Arabidopsis thaliana |
AT5G46110:CDS:2.1 | 66 | Chr5: 18697958-18698023 | Arabidopsis thaliana |
AT5G46110:CDS:4.2 | 66 | Chr5: 18698149-18698214 | Arabidopsis thaliana |
AT5G46110:CDS:5.2 | 79 | Chr5: 18698510-18698588 | Arabidopsis thaliana |
AT5G46110:CDS:6.2 | 121 | Chr5: 18698812-18698932 | Arabidopsis thaliana |
AT5G46110:CDS:7.2 | 96 | Chr5: 18699018-18699113 | Arabidopsis thaliana |
AT5G46110:CDS:8.2 | 113 | Chr5: 18699188-18699300 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G46110:exon:2 | 656 | Chr5: 18697235-18697890 | Arabidopsis thaliana |
AT5G46110:exon:1 | 649 | Chr5: 18697235-18697883 | Arabidopsis thaliana |
AT5G46110:exon:17 | 706 | Chr5: 18700195-18700900 | Arabidopsis thaliana |
AT5G46110:exon:10 | 45 | Chr5: 18699385-18699429 | Arabidopsis thaliana |
AT5G46110:exon:14 | 101 | Chr5: 18699959-18700059 | Arabidopsis thaliana |
AT5G46110:exon:3 | 634 | Chr5: 18697250-18697883 | Arabidopsis thaliana |
AT5G46110:exon:4 | 66 | Chr5: 18697958-18698023 | Arabidopsis thaliana |
AT5G46110:exon:5 | 66 | Chr5: 18698149-18698214 | Arabidopsis thaliana |
AT5G46110:exon:6 | 79 | Chr5: 18698510-18698588 | Arabidopsis thaliana |
AT5G46110:exon:7 | 121 | Chr5: 18698812-18698932 | Arabidopsis thaliana |
AT5G46110:exon:8 | 96 | Chr5: 18699018-18699113 | Arabidopsis thaliana |
AT5G46110:exon:9 | 113 | Chr5: 18699188-18699300 | Arabidopsis thaliana |
AT5G46110:exon:11 | 78 | Chr5: 18699385-18699462 | Arabidopsis thaliana |
AT5G46110:exon:12 | 117 | Chr5: 18699562-18699678 | Arabidopsis thaliana |
AT5G46110:exon:13 | 100 | Chr5: 18699764-18699863 | Arabidopsis thaliana |
AT5G46110:exon:15 | 105 | Chr5: 18699959-18700063 | Arabidopsis thaliana |
AT5G46110:exon:16 | 462 | Chr5: 18700195-18700656 | Arabidopsis thaliana |
AT5G46105:exon:1 | 72 | Chr5: 18698662-18698733 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G46110:five_prime_UTR:2 | 656 | Chr5: 18697235-18697890 | Arabidopsis thaliana |
AT5G46110:five_prime_UTR:4 | 61 | Chr5: 18697958-18698018 | Arabidopsis thaliana |
AT5G46110:five_prime_UTR:1 | 371 | Chr5: 18697235-18697605 | Arabidopsis thaliana |
AT5G46110:five_prime_UTR:3 | 356 | Chr5: 18697250-18697605 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G46105 | locus:1005716800 | AT5G46105 | 72 | Chr5: 18698662-18698733 | A. thaliana | pre-tRNA tRNA-Pro (anticodon: TGG);(source:Araport11, TAIR10) | NULL | pre-tRNA |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G46110.2 | 2055 | Chr5: 18697235-18700656 |
AT5G46110.1 | 2292 | Chr5: 18697235-18700900 |
AT5G46110.3 | 2000 | Chr5: 18697250-18700656 |
AT5G46110.4 | 2037 | Chr5: 18697250-18700656 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G46110:three_prime_UTR:2 | 688 | Chr5: 18700213-18700900 | Arabidopsis thaliana |
AT5G46110:three_prime_UTR:1 | 444 | Chr5: 18700213-18700656 | Arabidopsis thaliana |
AT5G46110:three_prime_UTR:3 | 433 | Chr5: 18700224-18700656 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE67320 | 117 | Chr5: 18700638-18700754 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE67320:transposon_fragment:1 | 117 | Chr5: 18700638-18700754 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
TPT_ARATH | function | Triose phosphate/phosphate translocator that transports inorganic phosphate, 3-phosphoglycerate (3-PGA) and triose phosphate. Functions in the export of photoassimilates from chloroplasts during the day. In the light, triose phosphates are exported from the chloroplast stroma in counter exchange with inorganic phosphate (Pi), generated during sucrose biosynthesis in the cytosol. Involved in photosynthetic acclimation, a light response resulting in increased tolerance to high-intensity light. |
TPT_ARATH | similarity | Belongs to the TPT transporter family. TPT (TC 2.A.7.9) subfamily. |
TPT_ARATH | tissue specificity | Expressed in shoots, leaves and flowers. |
Function
Gene Ontology
cellular component | |
---|---|
chloroplast membrane | ECO |
Golgi apparatus | ECO |
molecular function | |
phosphoglycerate transmembrane transporter activity | ECO |
triose-phosphate transmembrane transporter activity | ECO |
antiporter activity | ECO |
biological process | |
triose phosphate transmembrane transport | ECO |
photosynthetic acclimation | ECO |
carbohydrate transport | ECO |
phosphoglycerate transmembrane transport | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...