External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
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- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 41, Exons: 23, Five Prime UTRs: 4, mRNAs: 2, Three Prime UTR: 1, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G45560:CDS:4 | 66 | Chr5: 18466247-18466312 | Arabidopsis thaliana |
AT5G45560:CDS:5 | 104 | Chr5: 18466513-18466616 | Arabidopsis thaliana |
AT5G45560:CDS:6 | 68 | Chr5: 18467086-18467153 | Arabidopsis thaliana |
AT5G45560:CDS:7 | 117 | Chr5: 18467234-18467350 | Arabidopsis thaliana |
AT5G45560:CDS:8 | 41 | Chr5: 18467532-18467572 | Arabidopsis thaliana |
AT5G45560:CDS:9 | 101 | Chr5: 18467678-18467778 | Arabidopsis thaliana |
AT5G45560:CDS:10 | 96 | Chr5: 18468037-18468132 | Arabidopsis thaliana |
AT5G45560:CDS:11 | 65 | Chr5: 18468465-18468529 | Arabidopsis thaliana |
AT5G45560:CDS:12 | 72 | Chr5: 18468621-18468692 | Arabidopsis thaliana |
AT5G45560:CDS:13 | 156 | Chr5: 18468779-18468934 | Arabidopsis thaliana |
AT5G45560:CDS:14 | 227 | Chr5: 18469050-18469276 | Arabidopsis thaliana |
AT5G45560:CDS:15 | 46 | Chr5: 18469353-18469398 | Arabidopsis thaliana |
AT5G45560:CDS:16 | 146 | Chr5: 18469496-18469641 | Arabidopsis thaliana |
AT5G45560:CDS:17 | 102 | Chr5: 18469739-18469840 | Arabidopsis thaliana |
AT5G45560:CDS:18 | 45 | Chr5: 18469941-18469985 | Arabidopsis thaliana |
AT5G45560:CDS:19 | 141 | Chr5: 18470059-18470199 | Arabidopsis thaliana |
AT5G45560:CDS:20 | 96 | Chr5: 18470277-18470372 | Arabidopsis thaliana |
AT5G45560:CDS:21 | 102 | Chr5: 18470456-18470557 | Arabidopsis thaliana |
AT5G45560:CDS:22 | 102 | Chr5: 18470651-18470752 | Arabidopsis thaliana |
AT5G45560:CDS:1 | 138 | Chr5: 18465561-18465698 | Arabidopsis thaliana |
AT5G45560:CDS:2 | 75 | Chr5: 18465902-18465976 | Arabidopsis thaliana |
AT5G45560:CDS:3 | 54 | Chr5: 18466091-18466144 | Arabidopsis thaliana |
AT5G45560:CDS:4.1 | 66 | Chr5: 18466247-18466312 | Arabidopsis thaliana |
AT5G45560:CDS:5.1 | 104 | Chr5: 18466513-18466616 | Arabidopsis thaliana |
AT5G45560:CDS:6.1 | 68 | Chr5: 18467086-18467153 | Arabidopsis thaliana |
AT5G45560:CDS:7.1 | 117 | Chr5: 18467234-18467350 | Arabidopsis thaliana |
AT5G45560:CDS:8.1 | 41 | Chr5: 18467532-18467572 | Arabidopsis thaliana |
AT5G45560:CDS:9.1 | 101 | Chr5: 18467678-18467778 | Arabidopsis thaliana |
AT5G45560:CDS:10.1 | 96 | Chr5: 18468037-18468132 | Arabidopsis thaliana |
AT5G45560:CDS:11.1 | 65 | Chr5: 18468465-18468529 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G45560:exon:4 | 222 | Chr5: 18466091-18466312 | Arabidopsis thaliana |
AT5G45560:exon:1 | 416 | Chr5: 18465283-18465698 | Arabidopsis thaliana |
AT5G45560:exon:2 | 75 | Chr5: 18465902-18465976 | Arabidopsis thaliana |
AT5G45560:exon:3 | 54 | Chr5: 18466091-18466144 | Arabidopsis thaliana |
AT5G45560:exon:5 | 66 | Chr5: 18466247-18466312 | Arabidopsis thaliana |
AT5G45560:exon:6 | 104 | Chr5: 18466513-18466616 | Arabidopsis thaliana |
AT5G45560:exon:7 | 68 | Chr5: 18467086-18467153 | Arabidopsis thaliana |
AT5G45560:exon:8 | 117 | Chr5: 18467234-18467350 | Arabidopsis thaliana |
AT5G45560:exon:9 | 41 | Chr5: 18467532-18467572 | Arabidopsis thaliana |
AT5G45560:exon:10 | 101 | Chr5: 18467678-18467778 | Arabidopsis thaliana |
AT5G45560:exon:11 | 96 | Chr5: 18468037-18468132 | Arabidopsis thaliana |
AT5G45560:exon:12 | 65 | Chr5: 18468465-18468529 | Arabidopsis thaliana |
AT5G45560:exon:13 | 72 | Chr5: 18468621-18468692 | Arabidopsis thaliana |
AT5G45560:exon:14 | 156 | Chr5: 18468779-18468934 | Arabidopsis thaliana |
AT5G45560:exon:15 | 227 | Chr5: 18469050-18469276 | Arabidopsis thaliana |
AT5G45560:exon:16 | 46 | Chr5: 18469353-18469398 | Arabidopsis thaliana |
AT5G45560:exon:17 | 146 | Chr5: 18469496-18469641 | Arabidopsis thaliana |
AT5G45560:exon:18 | 102 | Chr5: 18469739-18469840 | Arabidopsis thaliana |
AT5G45560:exon:19 | 45 | Chr5: 18469941-18469985 | Arabidopsis thaliana |
AT5G45560:exon:20 | 141 | Chr5: 18470059-18470199 | Arabidopsis thaliana |
AT5G45560:exon:21 | 96 | Chr5: 18470277-18470372 | Arabidopsis thaliana |
AT5G45560:exon:22 | 102 | Chr5: 18470456-18470557 | Arabidopsis thaliana |
AT5G45560:exon:23 | 294 | Chr5: 18470651-18470944 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G45560:five_prime_UTR:2 | 416 | Chr5: 18465283-18465698 | Arabidopsis thaliana |
AT5G45560:five_prime_UTR:3 | 75 | Chr5: 18465902-18465976 | Arabidopsis thaliana |
AT5G45560:five_prime_UTR:4 | 156 | Chr5: 18466091-18466246 | Arabidopsis thaliana |
AT5G45560:five_prime_UTR:1 | 278 | Chr5: 18465283-18465560 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G45560.2 | 2732 | Chr5: 18465283-18470944 |
AT5G45560.1 | 2630 | Chr5: 18465283-18470944 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G45560:three_prime_UTR:1 | 192 | Chr5: 18470753-18470944 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE66490 | 224 | Chr5: 18470925-18471148 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE66490:transposon_fragment:1 | 224 | Chr5: 18470925-18471148 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
EDR2L_ARATH | function | Binds to phosphatidylinositol-4-phosphate (PtdIns(4)P). May regulate the salicylic acid- (SA-) mediated resistance to pathogens (By similarity). |
Function
Gene Ontology
cellular component | |
---|---|
endoplasmic reticulum membrane | ECO |
plasma membrane | ECO |
endosome membrane | ECO |
molecular function | |
lipid binding | ECO |
biological process | |
defense response | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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